Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1753 ATGGGATCCCACCGTGAAAATGGCAGCGTTGGAGGCTGGGCGGAGCCGCCCTCTTTGTGCGGCGGCGGCGTGGCGGCTTATTGGAGCGACATGGCGGAGGGGCTCAAGGGGAGCCATTTGGATGAGTTCAAGCGGATGGTGGAGGAATTTTGCCGCCCTATGGTTCGGCTCGGCGGTGACAGCCTCACGATAGTACAAGTCGCTGCCATTGCTGCTCGTGGCTCTGATGTTGCGGTGGAGCTCTCTAAGGCGGCTCGCCCTGCGGTGGAGGCGAGTAGTAGGTGGGTTGCTAAGAGCATGACGGTTGGGACTGATAGTTATGGTATTACGACTGGTTTTGGTTCTACCTCGCATCGTAGAACCGATCAAGGAGAAGACCTACAGAAAGAGTTGATTAGGGACGCGCAAATGGGTGGTGATTTTCCATTTTTACCCCTGGGAATCTACAGTGATTTTAAGTCCGGTGTTGTGACGGTTCCTTGTGATGTTAATCTCTCTCAACTTAAGAATGGCACGTACAAGGATTGTTGTGTAGTTGCGGACGTCCAAGGGGTAGATACTGCTATACACAACGAGGGGGCAGTCGCAAACTCATCTCGGGAGGGCCTTGCACTTGTCAATGGCACCGTGGTTGGCTCTGGTTTGGCTTCCATTGTTCTTTTCGAGGCAAACTTTCTTGCTATCCTTTCTGAGATCTTGTCAGTCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAGTTTATAGACCATTTGACTCATAAGTTAAAGCACCATCCTGGTCAGGTCGAAATGGCTGCAATTATGGAGCATATATTGGATGGAAGTTCGTATGCCAAAACTGCTAAAAAATTGCATGAAATTGACCCACTTCAAAAGCCTAAACAAGACCGATATGCTCTTAGAACCTCCCCTCAATGGCTTGGTCCTGGTCCTCAAATTGAAGTAATTAGGCACTCCACCAAAATGATTAAACGTGAGATTAACTCGGTCAATGATAATTCGTTGATTGATGTATCGAGAAACAAGGCTTTGCATGGAGGAAACTTCCAAGGTACTTCCATTGGTGTCTCCATGGACAATACTCGTTTAGCTATTGCTTCTATAGGCAAACTCATGTTTGCACAATTCTCAGAGCTCGTCAACGACTTTTACAACAATGGACTGCCTTCAAATCTCTCTGCTAGTAAAAACCCAAGTTTGGATTACGGGTTCCAAGGTGCTGAGATCGCAATGGCTTCGTACTGCTCTGAGCTTCAATACCTGGCAAATCCAGTAGCCAATCATGTCCAAAACGCAGAGCAACATAACCAAGACGTTAACTCATTGGGGTTGATATCGTCGAGAAAGACAGAAGAGGCTGTTGAGATATTGAAGCTTATGTCCACTACTTACTTGGTGGCGTTGTGTCAGACAATCGATTTAAGACACATGGAGGAGAATTTGAAGAAAACAGTAAAGAACACTGTCAGCCAAATGGCAAAGAAGATCCTTGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGATATAGTGAAAAGGACTTGCTTCAAGTGGTGGATCGAGAACACGTTTTTACCTACATAGATGACCCTTGCAGTGCTTCATATCCATTGATGCAAAAGCTCAGACAAGTATTGATCACAGCTTTTGAAGAAGTACTAAAAGCACTTTTGCCTGAAGAAGTGGAAAATGCAAGGATGGAAGTGGAGAATGGGAGCCCTACAATTGAAAACCAAATTAAAGAATGTCGATCGTATCCATTGTACAAGTTCATTAGAGAAACGTTGGGGACCCGGTTGTTGACCGGTGAGAAAGATGTTTCACCAGGAGAAGAATTCGATAAGGTTTTTTCAGCCATTACCGCTGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGCTCCACTCCCTCTTAGTTAG 1935 45.63 MGSHRENGSVGGWAEPPSLCGGGVAAYWSDMAEGLKGSHLDEFKRMVEEFCRPMVRLGGDSLTIVQVAAIAARGSDVAVELSKAARPAVEASSRWVAKSMTVGTDSYGITTGFGSTSHRRTDQGEDLQKELIRDAQMGGDFPFLPLGIYSDFKSGVVTVPCDVNLSQLKNGTYKDCCVVADVQGVDTAIHNEGAVANSSREGLALVNGTVVGSGLASIVLFEANFLAILSEILSVIFAEVMQGKPEFIDHLTHKLKHHPGQVEMAAIMEHILDGSSYAKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPGPQIEVIRHSTKMIKREINSVNDNSLIDVSRNKALHGGNFQGTSIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASKNPSLDYGFQGAEIAMASYCSELQYLANPVANHVQNAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTYLVALCQTIDLRHMEENLKKTVKNTVSQMAKKILVLHFNGNLHPIRYSEKDLLQVVDREHVFTYIDDPCSASYPLMQKLRQVLITAFEEVLKALLPEEVENARMEVENGSPTIENQIKECRSYPLYKFIRETLGTRLLTGEKDVSPGEEFDKVFSAITAGKLIDPMLECLKDWNGAPLPLS 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41917143 41922729 - Maker00039849 Lcy10g1753 645264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1753 644 Gene3D Fumarase/aspartase (Central domain) 211 639 - -
Lcy10g1753 644 Pfam Aromatic amino acid lyase 62 138 IPR001106 -
Lcy10g1753 644 Pfam Aromatic amino acid lyase 198 490 IPR001106 -
Lcy10g1753 644 CDD PAL-HAL 61 475 IPR001106 -
Lcy10g1753 644 SUPERFAMILY L-aspartase-like 27 138 IPR008948 GO:0003824(InterPro)
Lcy10g1753 644 SUPERFAMILY L-aspartase-like 198 643 IPR008948 GO:0003824(InterPro)
Lcy10g1753 644 Gene3D - 478 578 IPR023144 -
Lcy10g1753 644 PANTHER HISTIDINE AMMONIA-LYASE 199 643 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy10g1753 644 Gene3D - 24 146 IPR024083 -
Lcy10g1753 644 NCBIfam phenylalanine ammonia-lyase 194 634 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1753 Lcy-Chr10:41917143 Lcy1g1360 Lcy-Chr1:13149684 1.54E-299 dispersed
Lcy1g1355 Lcy-Chr1:13124488 Lcy10g1753 Lcy-Chr10:41917143 3.74E-283 wgd
Lcy10g1753 Lcy-Chr10:41917143 Lcy7g0646 Lcy-Chr7:5895435 3.72E-299 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1753 K10775 - csv:101204574 846.269