Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1758 ATGAATAGAGCTGATTCGGTGATAGAGCCAATGAGGAACCATGAGAAGTACTTAGATTCTCAGCTGTGGCATGCCTGTGCTGGTGGGATGGTTCAATTGCCTTCCATTAACTCAAAGGCAATTTACTTCCCCCAGGGCCATGCCGAGCACGCCCAGGGGAATGTCGATTTTGGGAATGCTCGAATTCCTTCTCTCATTCCTTGCAGGGTATCTGCCATAAGATATCTGGCAGATTCTGAAACGGATGAGGTTTTTACCAAGATAAAGTTGATTCCACTGAGGAACAATGAATTCAGTTTGGATGATGATGATGAGCTTCTTGGCCGCAACGAAATCAGGAGTCAGGAGAAACCTGCCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCTGTGCCTCGCTATTGTGCCGAGACGATCTTTCCTCGCTTGGATTACTCGGCAGAGCCTCCTGTCCAGACCATTCTTGCCAAGGATGTTCACGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGGACTCCCCGTCGCCATCTTTTGACGACTGGATGGAGCAATTTTGTGAATTCGAAGAAGCTTGTTGCTGGGGACTCGATTGTCTTCCTGAGGGCAGATACTGGTGATCTTTGTGTCGGAATTAGGCGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCTCCAGGGTGGAACCCAGCAAATTCAGGCTCTCCACTTGTGGGGTATTCTGATTTTATGAGGGAGAATGATGGCAGGTTGGTTAGAAGAAACTCAAATGGGAATCTGAGTGGGAGAGTGAAGGTCGAATCTGTCATCGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAGGGCCAATACTGTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACCGAGGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTTCTATCCAGGTAGCTGATCCTATTCGTTGGCCCGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAACCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATTCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCGCGTTTTCCACTTCCAGCAGAAACTGCTGTATTTGGTCATCTTCCAATGCCATCGTTTTCCACCAATTTCTTCGATGCAGCCGCCAACCCGTTACAAAGTATTACTATTACAGCTAACAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCAAACCGCCTTCGGGGCAATTTCCGGCTCCTCTTAAGCACCTTGATGGTGCCAGTCCTCTTCCTAGCATCCGGCCCGAAGATATTTTTGGAGGCACGAAAAACCCTGACAATCTTTCTCACTGGCTAACAATGGGAAATCACATCCAAAGCTCAAAAGAAAGGAAAGAAACAAAACCAGCTCATATCATATTGTTTGGCCAACTCATTCTTCCTAATCAACAGATTTCTAACAGCTCCTCCGGAGATACGACGAATGCATCAGATGTGAATGTAGAGAAAGCATCAAATCTTTCTGATGGTTCTGGTTTATCATCACAGCAGAATGGTTCACTGGAGAATTCATCAGATGGAGGATCTACCTCGTACAACGGTCCAGACAAACCTGGTCTTAGCTTGGATACTGGTCATTGCAAGGTGTTTATGGAGTGGGAGAATGTCGGTCGCACTCTTGATCTCTCGGTCCTCAGATCATATGAAGAATTGTACAGAAAGCTGGGCAATATGTTTGGTGTAGGAAGCTCAGAGATGCTGAATTCTGTTCTTTATCAAGATGCACTTGGTGCTACAAAGCATGCTGGAGAAGAGCCTTTCAGTGAGTTTCTGAAGACAGCAAGAAGACTAACTGTACTCGCAGATTCTCGAAGTAGCGACGACATTAGAATGTAG 2067 45.91 MNRADSVIEPMRNHEKYLDSQLWHACAGGMVQLPSINSKAIYFPQGHAEHAQGNVDFGNARIPSLIPCRVSAIRYLADSETDEVFTKIKLIPLRNNEFSLDDDDELLGRNEIRSQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNSKKLVAGDSIVFLRADTGDLCVGIRRAKRGIGCGIDYSPGWNPANSGSPLVGYSDFMRENDGRLVRRNSNGNLSGRVKVESVIEAAMLAASGKPFEIVYYPCAGTPEFVVRANTVRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISSIQVADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLPAETAVFGHLPMPSFSTNFFDAAANPLQSITITANNIPAGIQGARHTQFGLSSSNLQISKPPSGQFPAPLKHLDGASPLPSIRPEDIFGGTKNPDNLSHWLTMGNHIQSSKERKETKPAHIILFGQLILPNQQISNSSSGDTTNASDVNVEKASNLSDGSGLSSQQNGSLENSSDGGSTSYNGPDKPGLSLDTGHCKVFMEWENVGRTLDLSVLRSYEELYRKLGNMFGVGSSEMLNSVLYQDALGATKHAGEEPFSEFLKTARRLTVLADSRSSDDIRM 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41995200 41998823 + Maker00039213 Lcy10g1758 645269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1758 688 SUPERFAMILY DNA-binding pseudobarrel domain 109 223 IPR015300 -
Lcy10g1758 688 MobiDBLite consensus disorder prediction 561 594 - -
Lcy10g1758 688 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677(InterPro)
Lcy10g1758 688 Gene3D - 599 684 - -
Lcy10g1758 688 Pfam Auxin response factor 280 363 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy10g1758 688 Gene3D - 119 223 IPR015300 -
Lcy10g1758 688 MobiDBLite consensus disorder prediction 561 595 - -
Lcy10g1758 688 ProSiteProfiles PB1 domain profile. 601 679 IPR053793 -
Lcy10g1758 688 Gene3D - 319 390 - -
Lcy10g1758 688 FunFam Auxin response factor 119 223 - -
Lcy10g1758 688 FunFam Auxin response factor 318 391 - -
Lcy10g1758 688 SMART B3_2 121 223 IPR003340 GO:0003677(InterPro)
Lcy10g1758 688 CDD B3_DNA 120 221 IPR003340 GO:0003677(InterPro)
Lcy10g1758 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 680 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy10g1758 688 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1758 Lcy-Chr10:41995200 Lcy13g1587 Lcy-Chr13:34745385 6.16E-108 dispersed
Lcy1g1368 Lcy-Chr1:13243000 Lcy10g1758 Lcy-Chr10:41995200 8.73E-274 wgd
Lcy10g1758 Lcy-Chr10:41995200 Lcy8g1907 Lcy-Chr8:45332279 2.03E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19027 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1758 K14486 - csv:101204568 1136.71