Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1764 ATGGCAATGGCCGTAAGAAGCGACAAAGGTACGGAGCAGAGCAATGGCAAGTGGGTGGGCGGTGTGCCCAACTCAGCCGGAGCCGCAGAAAATCACTGCTCCTCTTCTCTTCTTTGCCTTCAATTTCCTCTCATTAAATGCCGCTCTTCGCTCCCCAACTTCGCACCATATTCATTCACAAATCCTCGCCGGAAATTGCTTCTCTCTCCTAGGGTTTCGATTTCTCTGTCTGTCTTTATGGCGAAGAATGCGGCGGAGCGCGGCTCGTTCTCGGCGAAGGACTACCAGGATCCGCCACCGGCGCCGCTCATCGACGCCGTGGAGATTACGAAGTGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCCACTTTGCTTTTCCTTTACGTCACTGTGTTGACGGTGATCGGCTACAAATCGCAGACGGATCATATCGGCAACAAGAATGTGGATCCTTGCGGTGGCGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATCTCAGGGGGCCACATAAACCCAGCAGTGACATTTGGGCTGCTGTTGGCCCGTAAAGTGTCACTGGTGCGGGCCGTGATGTACATGGTGGCCCAATGCTTGGGGGCCATAAGCGGAGTTGGGCTCGTAAAGGCCTTCCAGAAGGCCCACTTCCAGAAGCACGGCGGCGGGGCCAATGGGCTCGCCGACGGCTACACTGTCGGCGTCGGGCTGGCCGCCGAGATTGTCGGCACGTTTGTGTTGGTGTACACAGTCTTTTCTGCTACTGATCCCAAACGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTGGCCACCATTCCCATCACTGGCACTGGAATCAACCCAGCAAGGAGCTTGGGATCTGCTGTTATTTTGAATGAGCAAAAGGCTTGGAATAATCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGGTCATTCAGAAGCAACCCACATGTGTGA 1101 52.59 MAMAVRSDKGTEQSNGKWVGGVPNSAGAAENHCSSSLLCLQFPLIKCRSSLPNFAPYSFTNPRRKLLLSPRVSISLSVFMAKNAAERGSFSAKDYQDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKHGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVILNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42030570 42034985 + Maker00039685 Lcy10g1764 645275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1764 366 PRINTS Major intrinsic protein family signature 252 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 PRINTS Major intrinsic protein family signature 328 348 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 PRINTS Major intrinsic protein family signature 166 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 PRINTS Major intrinsic protein family signature 203 222 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 PRINTS Major intrinsic protein family signature 288 310 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 Pfam Major intrinsic protein 108 345 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 86 362 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lcy10g1764 366 NCBIfam MIP family channel protein 120 345 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 CDD MIP 116 348 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1764 366 Gene3D Glycerol uptake facilitator protein. 101 366 IPR023271 -
Lcy10g1764 366 SUPERFAMILY Aquaporin-like 108 350 IPR023271 -
Lcy10g1764 366 ProSitePatterns MIP family signature. 184 192 IPR022357 -
Lcy10g1764 366 FunFam Probable aquaporin PIP1-2 101 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1764 Lcy-Chr10:42030570 Lcy1g1374 Lcy-Chr1:13303493 2.14E-166 dispersed
Lcy1g1371 Lcy-Chr1:13291759 Lcy10g1764 Lcy-Chr10:42030570 1.91E-152 wgd
Lcy10g1764 Lcy-Chr10:42030570 Lcy7g0654 Lcy-Chr7:6003407 7.20E-168 wgd
Lcy10g1764 Lcy-Chr10:42030570 Lcy8g1900 Lcy-Chr8:45259851 3.70E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1764 K09872 - csv:101205700 507.294