Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1770 ATGGCTTCCAACACCTTGATGAGCTGCGGCATTGCCACCATCGCCTTCCCTTCTGTCCTATCTTCCTCCAAGTCCAAATTCGCCGCCGCTGTCCCGATTTCCGGCGTCGCCGTCAATGCCTCCTCGCGCTTCTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCGCCGTACCTCGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCTCTTCGGTTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATCCACTGCAGATGGGCCATGCTTGCTGTTCCAGGAATTTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCCATTCCAGGAGGCCAAGCTACCTACTTGGGGCAACCAGTTCCATGGGGAACTTTGCCTACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGAGGCGCTTTCGACCCATTGGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAATGGTCGGTTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACTGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGATCGATTTCGCCTTGA 741 54.39 MASNTLMSCGIATIAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42098067 42099691 - Maker00039757 Lcy10g1770 645281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1770 246 FunFam Chlorophyll a-b binding protein, chloroplastic 51 237 - -
Lcy10g1770 246 SUPERFAMILY Chlorophyll a-b binding protein 40 240 - -
Lcy10g1770 246 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
Lcy10g1770 246 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
Lcy10g1770 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 235 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1511 Lcy-Chr10:39552294 Lcy10g1770 Lcy-Chr10:42098067 1.54E-118 dispersed
Lcy10g1770 Lcy-Chr10:42098067 Lcy5g2537 Lcy-Chr5:48148995 1.49E-47 dispersed
Lcy10g1770 Lcy-Chr10:42098067 Lcy2g0568 Lcy-Chr2:4882718 1.09E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1770 K08907 - csv:101211428 497.278