Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1784 ATGGTGGATTGCTCTTCTTCTTCTTCTCTGGCTCTTTCTGGGTTTTGCCTCAAATCTCCTCTTTCATATGAAATGGTTTCATGGGAAATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCTGAGCCAGCTCCATTGGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCTGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTCGCCATTGCCACTGCAGTTGCTGCCGAGGCGGCCGTTGCAGCAGCTCAGGCTGCGGCCGAGGTTGTTCGGCTCACTACCATCCCTCGGTACTCTGGAAAATCAAAGGAAGAAATAGCAGCTATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGAAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACGTTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAACCAGGCTCTTCAGAGGCAGCTCCAACAAAAACACGAAAGAGAGCTTGAGAGATTAACTGCTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCACACTGGGGCTGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACTTCAATCGGAGACATTGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGAACTCCGACGAGCCAAAAAACGAGCCGAGCTCCGAGTCGCCAATCGCCGGCGACTCCTACGAAAGCGCAATCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGCGAGTCCAAGAGGATTCGGCTGGGGCGGAGACGACGATTCCAGAAGCGCATTGAGCGTCAAGTCGGAGCGGTACCGACGACACAGCATCGCCGGATCATCGGTGAGGGACGACGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGTTACATGGCGTCCACAGAAGCAGCAAGGGCTAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAAACGGCGGCGACTCCGGAAAAGGGACCGGCGAGTGGCGGCGTAAAGAAGCGGCTCTCGTTCCCCGCCTCGCCGGCGACGGCGACGGCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACGCTAGCCCGATCAAGAACGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1551 51.64 MVDCSSSSSLALSGFCLKSPLSYEMVSWEMGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPAPLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTASANNEWDDSTKSKEQVEARLVYRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAQSSLSAGRKLKPASPRGFGWGGDDDSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAATPEKGPASGGVKKRLSFPASPATATARRHSGPPKVDASPIKNVAERDFTGESR 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42199382 42203099 + Maker00039171 Lcy10g1784 645295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1784 516 PANTHER IQ-DOMAIN 5-RELATED 34 466 - -
Lcy10g1784 516 ProSiteProfiles IQ motif profile. 143 171 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 353 385 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 348 516 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 405 423 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 424 440 - -
Lcy10g1784 516 Coils Coil 206 226 - -
Lcy10g1784 516 SMART iq_5 142 164 IPR000048 GO:0005515(InterPro)
Lcy10g1784 516 Pfam IQ calmodulin-binding motif 146 164 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1784 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1784 Lcy-Chr10:42199382 Lcy11g2121 Lcy-Chr11:44727359 4.01E-36 dispersed
Lcy10g1012 Lcy-Chr10:32168657 Lcy10g1784 Lcy-Chr10:42199382 1.10E-29 transposed
Lcy4g0495 Lcy-Chr4:6046683 Lcy10g1784 Lcy-Chr10:42199382 4.54E-13 transposed
Lcy1g1390 Lcy-Chr1:13454724 Lcy10g1784 Lcy-Chr10:42199382 5.94E-125 wgd
Lcy10g1784 Lcy-Chr10:42199382 Lcy5g0267 Lcy-Chr5:2528251 1.45E-74 wgd
Lcy10g1784 Lcy-Chr10:42199382 Lcy7g0669 Lcy-Chr7:6192034 3.33E-140 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40