Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1784 ATGGTGGATTGCTCTTCTTCTTCTTCTCTGGCTCTTTCTGGGTTTTGCCTCAAATCTCCTCTTTCATATGAAATGGTTTCATGGGAAATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCTGAGCCAGCTCCATTGGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCTGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTCGCCATTGCCACTGCAGTTGCTGCCGAGGCGGCCGTTGCAGCAGCTCAGGCTGCGGCCGAGGTTGTTCGGCTCACTACCATCCCTCGGTACTCTGGAAAATCAAAGGAAGAAATAGCAGCTATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGAAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACGTTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAACCAGGCTCTTCAGAGGCAGCTCCAACAAAAACACGAAAGAGAGCTTGAGAGATTAACTGCTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCACACTGGGGCTGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACTTCAATCGGAGACATTGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGAACTCCGACGAGCCAAAAAACGAGCCGAGCTCCGAGTCGCCAATCGCCGGCGACTCCTACGAAAGCGCAATCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGCGAGTCCAAGAGGATTCGGCTGGGGCGGAGACGACGATTCCAGAAGCGCATTGAGCGTCAAGTCGGAGCGGTACCGACGACACAGCATCGCCGGATCATCGGTGAGGGACGACGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGTTACATGGCGTCCACAGAAGCAGCAAGGGCTAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAAACGGCGGCGACTCCGGAAAAGGGACCGGCGAGTGGCGGCGTAAAGAAGCGGCTCTCGTTCCCCGCCTCGCCGGCGACGGCGACGGCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACGCTAGCCCGATCAAGAACGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1551 51.64 MVDCSSSSSLALSGFCLKSPLSYEMVSWEMGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPAPLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTASANNEWDDSTKSKEQVEARLVYRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAQSSLSAGRKLKPASPRGFGWGGDDDSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAATPEKGPASGGVKKRLSFPASPATATARRHSGPPKVDASPIKNVAERDFTGESR 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42199382 42203099 + Maker00039171 Lcy10g1784 645295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1784 516 PANTHER IQ-DOMAIN 5-RELATED 34 466 - -
Lcy10g1784 516 ProSiteProfiles IQ motif profile. 143 171 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 353 385 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 348 516 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 405 423 - -
Lcy10g1784 516 MobiDBLite consensus disorder prediction 424 440 - -
Lcy10g1784 516 Coils Coil 206 226 - -
Lcy10g1784 516 SMART iq_5 142 164 IPR000048 GO:0005515(InterPro)
Lcy10g1784 516 Pfam IQ calmodulin-binding motif 146 164 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1784 Lcy-Chr10:42199382 Lcy11g2121 Lcy-Chr11:44727359 4.01E-36 dispersed
Lcy10g1012 Lcy-Chr10:32168657 Lcy10g1784 Lcy-Chr10:42199382 1.10E-29 transposed
Lcy4g0495 Lcy-Chr4:6046683 Lcy10g1784 Lcy-Chr10:42199382 4.54E-13 transposed
Lcy1g1390 Lcy-Chr1:13454724 Lcy10g1784 Lcy-Chr10:42199382 5.94E-125 wgd
Lcy10g1784 Lcy-Chr10:42199382 Lcy5g0267 Lcy-Chr5:2528251 1.45E-74 wgd
Lcy10g1784 Lcy-Chr10:42199382 Lcy7g0669 Lcy-Chr7:6192034 3.33E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1784 - - - 0.0