Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1785 ATGTTGCCGCCGCCGCCGCCTACGCCGACGGTGGTTCTCAGCCCGTGCGCCGCCTGTAAGATCCTCCGCCGGAAATGCGTCGATAAGTGCGTTTTAGCGCCTTATTTCCCTCCCACTGAGCCTCTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCTGGCAACGTCATCAAGTTCTTGCAGGAACTTTCCGAGGATCAGAGAGCAGATGCTGCGAGTAGTTTGGTGTACGAAGCGAACACGAGGATTCGAGACCCAATCTATGGTTGCACCGGTGCAATTTTTCAACTTCAAAATCAACTCAGCTTTTGGGCGTTTCTCGTAGAAGTTGCAGGATCTCAATCCGCCATCATGGGGTACGCATTCTTCTCTTCCCTACTGCCTCCGTTGATTTTTTCTTGGATATCTGTGGATGCTAGTTCGCCATTCGTTCTTGAAGGAATTGTATTTGTGCTGTCTGCTTTTACTGTACTTTAG 477 50.31 MLPPPPPTPTVVLSPCAACKILRRKCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELSEDQRADAASSLVYEANTRIRDPIYGCTGAIFQLQNQLSFWAFLVEVAGSQSAIMGYAFFSSLLPPLIFSWISVDASSPFVLEGIVFVLSAFTVL 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42215302 42218905 + Maker00039450 Lcy10g1785 645296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1785 158 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Lcy10g1785 158 Pfam Lateral organ boundaries (LOB) domain 15 102 IPR004883 -
Lcy10g1785 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1785 Lcy-Chr10:42215302 Lcy11g0364 Lcy-Chr11:6118504 9.19E-47 dispersed
Lcy10g1785 Lcy-Chr10:42215302 Lcy7g0815 Lcy-Chr7:7965904 3.63E-47 wgd
Lcy10g1785 Lcy-Chr10:42215302 Lcy8g1878 Lcy-Chr8:45098791 1.18E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19030 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1785 - - - 0.0