Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1812 ATGGAGATTTCATACGCATCACCTAGCGCCACGAGTCTTGCTTCCTCTAATTCTGCCCTTTCCGCCATGCCTGGCTCGACCCGACCGGTCAAGGTCATCCCCTTGCAGCACCCCAGTACGACGTCGTCCTCGCCGGCCGGTGGTTCTCACGCCGGCGCTCTGGTGAAGACATGGACGGCGAAGGTTAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTGCTACCTTGCTCCCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATCTCTTGTCCGGGATTACTATTGGCATCATGCTCGTTCCGCAGGTGCAATTCTACTCTCTCTCGAAGTTTGGCTCAGAAATGATTAGTGCTATTGACTGTAAATTATTTTTCCGACCTTTTGTTCTGACTTTCCAGGCAATGTCTTATGCAAAATTGGCCGGGCTTCAACCAATATATGGACTTTATTCTGGTTTTCTCCCATTGTTCGTCTATGCAATTTTTGGTTCCTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTGGTTTCTCTCCTGGTTTCTAATGTCTTGGGTGGAATTGTCAATTCATCTGAGGAACTATATACGGAACTTGCGATATTATTGGCACTCATGGTTGGGATATTGGAATGTGTGATGGGGCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGTCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCATTGTGATTGGATTATCCCAAGTGAAATACTTTCTAGGGTACAATGTATCAAGAAGTAGCAAAATTATACCTCTAATAGAGAGCATAATAGCTGGAGCAGACGGGTTCTTATGGGCTCCTTTCATAATGGGATCAATCATCCTTGCAATACTTCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCACTTACGATTTCTCAGAGTTGCTGGTCCCCTTACAGCAGTTGTTATGGGCACAACTTTGGTGAAAGTATTGAATCTACCTTCCATTTCTTTGGTTGGAGACATTCCCCAAGGCCTTCCAAAGTTTTCTGTTCCTAAAAGGTTCGAGCATGTGAAGTCATTGATTCCAACTGCCTTTCTGATCACAGGAGTGGCTATATTGGAATCTGTTGGTATTGCAAAAGCATTAGCAGCCAAGAATGGTTATGAGTTAGATTCAAATCAGGAGTTATTTGGTCTTGGAGTAGCCAATGTTGTTGGCTCATTTTTTTCAGCATATCCCACAACAGGTTCTTTCTCGAGATCAGCTGTGAATCACGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGCGGTGCCCTTCTTTTCTTGACTCCATTGTTTGAGCACATACCTCAGTGTGCTTTGGCTGCCATTGTGATCTCTGCTGTAATAACTTTGGTGGATTATGATGAGGCTATTTTCTTGTGGCATATAGATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTGCTACATTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGTCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCTGGCACCACTGTGTATAGAAATATTCAACAATATCCTGAGGCATATACTTACAATGGAATTGTGATTGTTCGGATTGATGCACCAATCTATTTTGCAAACACGAGTTACATCAAAGATAGGTTACGTGAATATGAAGTTGAAGTGGATCGATCAACTGGTCGTGGGCCAGATGTTGAAAGAGTCTATTTCGTGATTATAGAGATGGCACGTAAGTTTATTCATCCTTCCACTTTTGTAGAGTTCATAAAATACATTGCCATTTCCAATCCAAATCGAGATGTTTTGCTTACATTTTCAAGATCCGGCGTCGTTGAACTTATTGGCAAGGAATGGTTTTTTGTGAGAGTCCATGATGCAGTTCAAGTTTGTCTTCAGCATGTGGAGAGCTTAAAGGAAACAACCAAGATTGCACATTCTTCACTAAAAGATGCATCAAGCTTTCTCCAAAGGTTAGTGGATTCCAGAAGTGAAGATCTATCAGTGAGTCAATTAGAATCAGGCTTCCAAAAGCTTCCAAGTTCCAATGAAATCGACCCTCAATTGGAACCATTACTGTCTCGAAATCCTTGA 2172 42.63 MEISYASPSATSLASSNSALSAMPGSTRPVKVIPLQHPSTTSSSPAGGSHAGALVKTWTAKVKRMTWIHWMELLLPCSRWIRTYKWREYLQSDLLSGITIGIMLVPQVQFYSLSKFGSEMISAIDCKLFFRPFVLTFQAMSYAKLAGLQPIYGLYSGFLPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQVKYFLGYNVSRSSKIIPLIESIIAGADGFLWAPFIMGSIILAILQIMKHLGKTRKHLRFLRVAGPLTAVVMGTTLVKVLNLPSISLVGDIPQGLPKFSVPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYDEAIFLWHIDKKDFLLWVITAIATLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANTSYIKDRLREYEVEVDRSTGRGPDVERVYFVIIEMARKFIHPSTFVEFIKYIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLKETTKIAHSSLKDASSFLQRLVDSRSEDLSVSQLESGFQKLPSSNEIDPQLEPLLSRNP 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42434872 42444002 + Maker00039168 Lcy10g1812 645323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1812 723 ProSiteProfiles STAS domain profile. 544 603 IPR002645 -
Lcy10g1812 723 Pfam STAS domain 545 602 IPR002645 -
Lcy10g1812 723 ProSitePatterns SLC26A transporters signature. 150 171 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy10g1812 723 MobiDBLite consensus disorder prediction 701 723 - -
Lcy10g1812 723 NCBIfam sulfate permease 137 653 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1812 723 Pfam Sulfate permease family 137 494 IPR011547 GO:0016020(InterPro)
Lcy10g1812 723 CDD STAS_SulP_like_sulfate_transporter 545 650 - -
Lcy10g1812 723 Gene3D STAS domain 524 661 IPR036513 -
Lcy10g1812 723 PANTHER SULFATE TRANSPORTER 62 659 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1812 Lcy-Chr10:42434872 Lcy9g1604 Lcy-Chr9:41227016 4.59E-93 dispersed
Lcy10g1812 Lcy-Chr10:42434872 Lcy3g1580 Lcy-Chr3:42933186 2.27E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1812 K18059 - csv:101202870 1151.73