Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1817 ATGCCAATTCACAAATTCACACTCGGATCACCGGGAGAGGCGAGCCAACCGGACGCGATAAAGGCTGCATTTGCCGAATTCTTCTCCATGATCATATTTGTTTTCGCCGGACAAGGATCCGGTTTGGCTTTCAATAAGTTAACGGAAGGTGGATCTGCGACACCGTCGGGGCTGATAGTCGCAGCTCTGGCTCACGCTTTTGCGTTGATTGTGGCGGTCTCCGTCGGAGCCAATATCTCCGGCGGCCATGTGAATCCGGCAGTTACATTTGGTGCACTTGTTGGTGGAAACTTATCGTTCTTTAGAAGTATATTGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTTCTTAAGTTTGCGACCGGTGGACAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTATGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTGTACACAGTCTATGCAACAGCCATGGATCCAAAGAAGGAGAATTTGGGCATAATTGCTCCAATTGCTATTGGTTTCATTGTTGGTGCCAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCTGTCTCCTTTGGCCCTGCTGTGGTCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCAGCCATTGTCTATGACACCATCTTTATCTGTGACTCCATGCATGATCCTCTTACTCAGTACAATGACTTTTAG 762 48.16 MPIHKFTLGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFNKLTEGGSATPSGLIVAALAHAFALIVAVSVGANISGGHVNPAVTFGALVGGNLSFFRSILYWIAQLLGSVVACFLLKFATGGQVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAMDPKKENLGIIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWLGPMAGAAIAAIVYDTIFICDSMHDPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42496317 42499468 + Maker00039298 Lcy10g1817 645328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1817 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PANTHER AQUAPORIN-8 6 241 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lcy10g1817 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g1817 253 FunFam Probable aquaporin TIP1-1 4 252 - -
Lcy10g1817 253 SUPERFAMILY Aquaporin-like 16 242 IPR023271 -
Lcy10g1817 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
Lcy10g1817 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1817 Lcy-Chr10:42496317 Lcy5g0321 Lcy-Chr5:3082269 5.45E-111 dispersed
Lcy10g1817 Lcy-Chr10:42496317 Lcy1g1316 Lcy-Chr1:12646879 4.26E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1817 K09873 - csv:101222909 462.996