Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1821 ATGGATGAGAGAAGTGAAATGTTGAAGAAGGCAAAGCCATATTTGGGAGTGATTGCATTAAGATTTGGTTCAGCTGGAATGTCTATAATTTCAAAGGCTGCTCTAAACCAAGGAATGAATCTACTTGTCACCATTGTTTATCGTTACTTTATTGGTGCCATTCTTGTTGCTCCTTTTGCCCTTCTCTTAGACAGGCCTGTGATAGCCCAAAGTTTGATTTACTCTGGTACTAAATACACAACTGCAACTTTTGCAACTGCTATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGCACTTTGGTTACTGTAGGAGGAGCAATGATGATGGCTCTTATAAAAGGACCCATGTTGAGTTTGCCTTGGACCAAAGAGAATTTCAACCCTCACTCTTATTATAATTACCTTGCAAACAAGCAAGAACCTGTTAAGGCTGCCATTGTTATCACCATTTCAAGTATCTGTTCCTCTGCCTTCACCATTCTTCTGGCACATACAATAAGATCATACCCAGCTGAGTTCACACTAACTACTTTCATATGCTTGGCTGGAGCTGTGGAAAGCTCTATTATAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCAGATTCCATACTCTTAGCAGCTCTCTATGGTGGAATAATATCTTCTGGGATCACCTATTACATCCAAGGAGTGGTGATGAAGTTAAAAGGGCCTGTTTTTGTAACTGCCTTCAATCCTCTCAGCATGGTCATAGTTGCAATTATTAGCTCATTCATATTCGCCGAGACACTACGCATGGGAAGGGTTGTTGGAGCATGTGTCATAATTCTAGGTCTTTATTTGGTTCTTTGGGGAAAGAGCAAAGATGAGCTTCCATTCAAAGTGGGCAGTGATGACTTACCAACTTCACATCAAAACTCAGCTGCCAAAAGCCAGCATCTTAATAAGCTTTCAGATCAACATCTCAAAGCTGCTGAACCAACAACACTTGGTGATTCTTCCACTGTTTGA 1077 40.67 MDERSEMLKKAKPYLGVIALRFGSAGMSIISKAALNQGMNLLVTIVYRYFIGAILVAPFALLLDRPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMALIKGPMLSLPWTKENFNPHSYYNYLANKQEPVKAAIVITISSICSSAFTILLAHTIRSYPAEFTLTTFICLAGAVESSIIALAFEWNNPAAWALHADSILLAALYGGIISSGITYYIQGVVMKLKGPVFVTAFNPLSMVIVAIISSFIFAETLRMGRVVGACVIILGLYLVLWGKSKDELPFKVGSDDLPTSHQNSAAKSQHLNKLSDQHLKAAEPTTLGDSSTV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42544161 42546991 - Maker00039700 Lcy10g1821 645332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1821 358 Pfam EamA-like transporter family 167 305 IPR000620 GO:0016020(InterPro)
Lcy10g1821 358 PANTHER WAT1-RELATED PROTEIN 17 325 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy10g1821 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 309 - -
Lcy10g1821 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1821 Lcy-Chr10:42544161 Lcy10g1823 Lcy-Chr10:42573989 1.96E-201 dispersed
Lcy10g1820 Lcy-Chr10:42530696 Lcy10g1821 Lcy-Chr10:42544161 8.30E-94 tandem
Lcy10g1821 Lcy-Chr10:42544161 Lcy10g1822 Lcy-Chr10:42562423 6.81E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1821 - - - 0.0