Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1822 ATGGATGAGAGAAGTGAAATGTTGAAGAAGGCAAAGCCATATTTGGGAGTGATTGCATTAAGATTTGGTTCAGCTGGAATGTCTATAATTTCAAAGGCTGCTCTAAACCAAGGAATGAATCAACTTGTCACCATTGTTTATCGTTACTTTATTGGTGCCATTCTTGTTGCTCCTTTTGCCCTTCTCTTAGACAGGCCTGTGATAGCCCAAAGTTTGATTTACTCTGGTACTAAATACACAACTGCAACTTTTGCAACTGCTATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGCACTTTGGTTACTGTAGGAGGAGCAATGATGATGGCTCTTATAAAAGGACCCATGTTGAGTTTGCCTTGGACCAAAGAGAATTTCAACCCTCACTCTTATTATAATTACCTTGCAAACAAGCAAGAACCTGTTAAGGCTGCCATTGTTATCACCATTTCAAGTATCTGTTCCTCTGCCTTCACCATTCTTCTGGCACATACAATAAGACAATACCCAGCTGAGTTCACACTAACTACTTTCATATGCTTGGCTGGAGCTGTGGAAAGCTCTATTATAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCTGACTCCATACTCTTAGCTGCTCTCTATGGTGGAATAATATCTTCTGGGATCACCTATTACATCCAAGGAATGGTGGTGAAGTTAAAAGGGCCTGTTTTTGTAACTGCCTTTAATCCTCTCAGCATGGTCATAGTTGCAATTATTAGCTCATTCATATTCGCCGAGACACTACGCATGGGAAGGGTTGTTGGAGCATGTGTCATAATTATAGGTCTTTATTTGGTTCTTTGGGGAAAGAGCAAAGATGAGCCTCCATTCAAAGTGGGCAGTGATGACTTACCAACTTCACATCAAAACTCAGCTGCCAAAAGCCAGCGTCTTAATAATAAGCTTTCAGATCAACATCTCAAAGCTGCTGAACCAACAACACTTGGTGATTCTTCCACTGTTTGA 1080 40.65 MDERSEMLKKAKPYLGVIALRFGSAGMSIISKAALNQGMNQLVTIVYRYFIGAILVAPFALLLDRPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMALIKGPMLSLPWTKENFNPHSYYNYLANKQEPVKAAIVITISSICSSAFTILLAHTIRQYPAEFTLTTFICLAGAVESSIIALAFEWNNPAAWALHADSILLAALYGGIISSGITYYIQGMVVKLKGPVFVTAFNPLSMVIVAIISSFIFAETLRMGRVVGACVIIIGLYLVLWGKSKDEPPFKVGSDDLPTSHQNSAAKSQRLNNKLSDQHLKAAEPTTLGDSSTV 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42562423 42565176 - Maker00039183 Lcy10g1822 645333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1822 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 310 - -
Lcy10g1822 359 PANTHER WAT1-RELATED PROTEIN 17 325 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy10g1822 359 MobiDBLite consensus disorder prediction 340 359 - -
Lcy10g1822 359 Pfam EamA-like transporter family 167 305 IPR000620 GO:0016020(InterPro)
Lcy10g1822 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1822 Lcy-Chr10:42562423 Lcy7g0868 Lcy-Chr7:8637554 1.19E-128 dispersed
Lcy10g1821 Lcy-Chr10:42544161 Lcy10g1822 Lcy-Chr10:42562423 6.81E-246 tandem
Lcy10g1822 Lcy-Chr10:42562423 Lcy10g1823 Lcy-Chr10:42573989 5.01E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1822 - - - 0.0