Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1823 ATGGAACAGGCAGGACATATGTTTGAGAAGGCAAAGCCATATTTGGGAGTAATTGCACTAAGATTTGCTTCTGCAGGAATGTCTATTATCTCTAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACACTATTGGAGCTATTGTTGTTGCTCCTTTTGCCTTTGTCTTAGACAGGAAAATAAGGCCAAAGATGACTCTTCGGATTTTCGCCAAGATTCTTCTACTGGGTTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGGTACTAAATACACAACTGCAACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCGTTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAAAAGTTTACGAAGCCAGGCAAAGATTTTAGGCACTTTAGTTACAGTAGGAGGAGCAATGATGATGGCTCTTATAAAAGGACCCATGTTGAGTTTGCCTTGGACCAAAGAGAATTTCAACCCTCACTCTTATTCTAACCTTGCAAATAAGCAAGAACCTGTTAAGGCTGCCATTGTAATCACCATTTCAAGTATCTGCTCCTCTGGCTTCACCATTCTTCTGGCACATACGATAAGATTATACCCAGCTGAGCTCACACTAACTACTTTCATATGCTTGGCTGGAGCTGTGGAAAGCACTATTCTAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCTTTACATGCAGATTCCATACTCTTAGCTGCTCTCTATGGTGGCATAGTATCTTCTGGGATTGCCTATTATCTCCAAGGAGTTGTGGTGAAGTTAAAAGGACCTGTGTTTGTTACTGCATTTAATCCTCTCAGCATGGTGATAGTTGCTGTGATTAGTTCATTCATATTCGCTGAGAGGCTGCGCCTAGGAAGGGTCATTGGAGCAGCTGTGATAATTGTAGGCCTTTACATGGTTCTGTGGGGCAAGAGCAAAGATCAGCTTCCATTCAAAGTGAGGAATGATGAATTACCAACCTCAAACCAAAACTCAACTACCACAAACCAGCAGCTGAAGCCCTCAGATCAACAACTCAAAGCTGCAGCCCCAACAACACTAAGCAACAATTCCACTGCTTGA 1134 42.24 MEQAGHMFEKAKPYLGVIALRFASAGMSIISKAALNQGMNQLVTIVYRYTIGAIVVAPFAFVLDRKIRPKMTLRIFAKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIKSLRSQAKILGTLVTVGGAMMMALIKGPMLSLPWTKENFNPHSYSNLANKQEPVKAAIVITISSICSSGFTILLAHTIRLYPAELTLTTFICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGGIVSSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVAVISSFIFAERLRLGRVIGAAVIIVGLYMVLWGKSKDQLPFKVRNDELPTSNQNSTTTNQQLKPSDQQLKAAAPTTLSNNSTA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42573989 42577101 - Maker00039821 Lcy10g1823 645334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1823 377 PANTHER WAT1-RELATED PROTEIN 17 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy10g1823 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Lcy10g1823 377 MobiDBLite consensus disorder prediction 339 377 - -
Lcy10g1823 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 330 - -
Lcy10g1823 377 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020(InterPro)
Lcy10g1823 377 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1821 Lcy-Chr10:42544161 Lcy10g1823 Lcy-Chr10:42573989 1.96E-201 dispersed
Lcy10g1823 Lcy-Chr10:42573989 Lcy7g0874 Lcy-Chr7:8717703 2.10E-131 dispersed
Lcy10g1822 Lcy-Chr10:42562423 Lcy10g1823 Lcy-Chr10:42573989 5.01E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1823 - - - 0.0