Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1836 ATGCATCATCCTCTTCTTGAATCCCACTACCATGCTAGGCACGACTATGACAGTGGGACAATGACTTTAAGTATCATCCTTCACAACCATGGACGTCCATGTAATACCAACAATGACGGCCGTGCTCCAGTCCGCTTTCTTGATTCTCTATTCTCGTCTCCAAACAACCCCCTCATTCAACTGCGGTTCGGCGGGAGGATGGAATTTGCCGACGAGCTCGCGGCCGGAGCCACCGCCTCCAATTCCAACCGCCACAAGCCCTCCGATACCAGAGACGGCGGCGACCTCTCGTCCTCCGACAATGACACCGAAGATGCACATCCTGTTTTCTCTAACATGCCTGCTTCACTCGCACCACCAGTATCTCCCATTCTTCCTCTGCAAAATAGATGTAATGTAGCAATTCAGGCTGTTAAGGATACCCGAATGCCTGCGTATGTGTGGCAAGTATTACAAATTCAAGTGTGCATGGGACTGTCTTCAGTTTCACCTCTGTCTTGTTGTGACCTTGCACCCCATTTTTTCTTGGAGAATGAATTTGCTGCTAAACCTGGTACTCCTGCATGGGATGCTTCCAGAGAGCCCCAATATATGGATGATAAATTGGAGACAATACAAAATATATGTCAGAAAATTGTGGACACCACAAACTTGTACTCATTTTCTAAATTGGATGACCAGCAAGTATATTCTCTTATGAGGCTGAGGGAAATTTCTCATCGAGTTATTAATGACCGAGATCCAAGGGTGACAAAAAATGATGTGATTAGTGCTATGTGCTTTTACATTAACAGGATGGCAGGTAAGTGCAAGGATATTGTTGACATTTTGAATAGGATGTCATATAAAGACTTAGATGACCAGCAAGTGCAACAGTTTTTGAGATTGAAAGAGCTTCTATGTGGGATTGTTGATGGAGCTAAAGATGTGGAAACTGAAACTTCTCATATTGTTGAACAGGGCGTAGCAAATGATATGTGGATGACAGAGAGTCTGGAGGTTGAGCCAATTGACTCCAGCAATGATGATGTACTGCTTGGAGAGAGACAAATTATAATGGTTGAAGATGAACAGGCAGTGGCTGAAGCTAGGCTCGAGAATCAATATTGTGACCTGTCACATGTTAAGCACACTATTAGTTGGCCACCAAATGGTAGCTTAACCTTAGAGTGGGTGGTAGAGATGATGACAACACTTGAACAATCTTCAAGAACCTACTCGCCTGCAGAGTTTCAACTTGTCATGCCAGTTTCTGTGGTAGATGCAATACTAGATGTAGCTGCAAGTATCCTTCACAAGGACCCAAACTGTGTGGAAATTGACTGCCATGGAGAAGTTTCCAAAGTCGTTATAGTTGGGGACATTCATGGTCATTATCATGACTTACTTCATCTCTTTGAACTTGCTAACTTACCATCTAAGAGCCAGTGTTATGTTTTTAATGGTAATTACGTGGATAGAGGAGCATGGGGACTGGAAGTGTTTTTGGTCTTGTTGGCATGGAAGATCTTGATGCCTGATAGAGTATGTCTACTCCGTGGAAATCATGAAACAAGAATTTGTACATCATCCTTCGGTTTTGAGAAAGAAGTAAGGACAAAATATGGCGAGCAAGGTGAAAAAGTATATCACAGGTGCTTGGAAACATTTAAGGAACTTCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACCCATGGAGGGTTATTTCGTAAGCCATGCAATCCTGATGTGCAGAATTACAAGGAAAGGAAGACACATGAGCTGGAGATTGGATCCTTACAAGACTTATCTAAGCTCGAAAGGTTTTTTGTTGATATTCCAACTAAAGATGAAGATCCAAATATAATTTTGGCAGATGTATTGTGGTCTGATCCTTCTAAAGTAGATGGTTTAAGAAAAAACCAAGCCAGAGGAGCAGGTTTATTATGGGGTCCTGATTCTACGGAAGCATTCTTAAAGCTGTCCAATTTAAAGTTGATCATTAGATCACATGAAGGTCCAGATTCAAGGGACGGTAAAATTGATTTTGATGATATGATAATGGGTTATAGCGCAGACCATGACAGAGAATCAGGGAAATTATATACTCTATTTAGCGCTCCAGATTTCCCACAGTTTGGTCAGAAGAGCTACAATAATGAGGGAGCATATGCTACTTTGAAGCATCCGGATTTTGAAACTCCATCCTTCCATACATTTAAAGCGATAGATAAACCGAAGGTAGACGTTTGCTATTTTGGTTGTGAAGGACATGATGTTGACTTAGACTTGACATTAATGGCTCTGGCTGATGCCGTCTCTTCTAAAAACTCTAGTCCTATTGAGATTCATTCTGGGGTTGATTTTGAGGCATTAGGAATATTAAACCCACCTTCTTGGAGCATTACATTGACAGATGATGCTACAGGTACCCAGAATGTTCAAATTCCGAAAGCTCCCGTGGTAGAAGGGCTGCCTTTGCCGCCAAGCATAGAGGAGCCTCATAAGGCTGCATATGAGTACTTCCTGGAGCTCATTGCAGGATTGAAATTTATGCTTCAAACAGCGGTTCGGTGCCCAAAGTTTAGTGATCTTCCTTGTTGTAATGTCAAAGGACAACGTTGCGAAGATCGAGATGAGATTTTTCCTTTCAACGACACATCCCAAGTTCCCAACGCAATTCTTGATGCCCATCGGAAGTTACCCTGGACGCGTGAAATGGGAAAACCTTTGTCTAGGAGCATTTCCCCTCAATATGAGCTGATGAAGGCTATATTGTCGATCAGAAGAAGCTAG 2781 42.43 MHHPLLESHYHARHDYDSGTMTLSIILHNHGRPCNTNNDGRAPVRFLDSLFSSPNNPLIQLRFGGRMEFADELAAGATASNSNRHKPSDTRDGGDLSSSDNDTEDAHPVFSNMPASLAPPVSPILPLQNRCNVAIQAVKDTRMPAYVWQVLQIQVCMGLSSVSPLSCCDLAPHFFLENEFAAKPGTPAWDASREPQYMDDKLETIQNICQKIVDTTNLYSFSKLDDQQVYSLMRLREISHRVINDRDPRVTKNDVISAMCFYINRMAGKCKDIVDILNRMSYKDLDDQQVQQFLRLKELLCGIVDGAKDVETETSHIVEQGVANDMWMTESLEVEPIDSSNDDVLLGERQIIMVEDEQAVAEARLENQYCDLSHVKHTISWPPNGSLTLEWVVEMMTTLEQSSRTYSPAEFQLVMPVSVVDAILDVAASILHKDPNCVEIDCHGEVSKVVIVGDIHGHYHDLLHLFELANLPSKSQCYVFNGNYVDRGAWGLEVFLVLLAWKILMPDRVCLLRGNHETRICTSSFGFEKEVRTKYGEQGEKVYHRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNPDVQNYKERKTHELEIGSLQDLSKLERFFVDIPTKDEDPNIILADVLWSDPSKVDGLRKNQARGAGLLWGPDSTEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSADHDRESGKLYTLFSAPDFPQFGQKSYNNEGAYATLKHPDFETPSFHTFKAIDKPKVDVCYFGCEGHDVDLDLTLMALADAVSSKNSSPIEIHSGVDFEALGILNPPSWSITLTDDATGTQNVQIPKAPVVEGLPLPPSIEEPHKAAYEYFLELIAGLKFMLQTAVRCPKFSDLPCCNVKGQRCEDRDEIFPFNDTSQVPNAILDAHRKLPWTREMGKPLSRSISPQYELMKAILSIRRS 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42667000 42677174 - Maker00039637 Lcy10g1836 645347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1836 926 PRINTS Serine/threonine phosphatase family signature 601 628 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 PRINTS Serine/threonine phosphatase family signature 511 535 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 PRINTS Serine/threonine phosphatase family signature 478 505 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 PRINTS Serine/threonine phosphatase family signature 548 574 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 PRINTS Serine/threonine phosphatase family signature 448 475 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 PRINTS Serine/threonine phosphatase family signature 695 711 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 Gene3D - 350 751 IPR029052 -
Lcy10g1836 926 ProSitePatterns Serine/threonine specific protein phosphatases signature. 512 517 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 SUPERFAMILY Metallo-dependent phosphatases 397 743 IPR029052 -
Lcy10g1836 926 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 204 746 IPR051134 -
Lcy10g1836 926 Pfam Calcineurin-like phosphoesterase 448 667 IPR004843 GO:0016787(InterPro)
Lcy10g1836 926 MobiDBLite consensus disorder prediction 76 113 - -
Lcy10g1836 926 SMART pp2a_7 415 739 IPR006186 GO:0016787(InterPro)
Lcy10g1836 926 MobiDBLite consensus disorder prediction 85 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1836 Lcy-Chr10:42667000 Lcy6g2371 Lcy-Chr6:48479526 6.86E-117 dispersed
Lcy10g1830 Lcy-Chr10:42616616 Lcy10g1836 Lcy-Chr10:42667000 2.41E-08 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1836 K04460 - csv:101211172 1258.82