Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g1840 | ATGCGGATCATCAATGAGCCTACAGCCGCAGCTATCGCTTATGGACTCGACAAAAAGGCAAGCAGTGTCGGCGAGAAGAATGTACTGATATTTGATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGTATTTTTGAGGTGAAGGCAACAGCCGGTGACACCCATCTCGGAGGCGAGGACTTCGACAACAGATTGGTTAACCATTTCGTTCAGGAATTCAAGAGAAAGCACAAGAAGGACATCAGTGGAAATCCGAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAGAGGGCCAAGAGGACCCTTTCATCCACTGCCCAAACTACAATCGAGATTGATTCTTTGTATGAGGGAATTGATTTCTATACAACCATCACTCGTGCTAGATTCGAGGAGCTCAACATGGACTTGTTCCGAAAGTGTATGGAGCCGGTTGAGAAGTGTCTGAGAGATGCAAAGATGGACAAAAGCACCGTCCATGATGTTGTCCTTGTTGGTGGCTCTACAAGGATTCCTAAGGTGCAGCAGCTATTGCAGGATTTCTTCAATGGCAAAGAACTCTGCAAAAGTATCAATCCTGATGAGGCAGTTGCTTATGGGGCTGCTGTCCAAGCGGCGATCTTGAGTGGTGAAGGAAATGAGAAAGTGCAGGATCTTCTTCTTTTGGATGTCACTCCTCTGTCTCTTGGTTTGGAAACTGCAGGAGGTGTGATGACAGTTTTGATTCCAAGGAATACCACCATACCCACCAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAACCTGGTGTTCTCATTCAGGTCTACGAGGGTGAGAGGACAAGAACCAGAGATAATAACTTGTTGGGCAAGTTTGAACTTTCCGGCATCCCTCCGGCTCCGAGAGGTGTTCCACAGATCACTGTCTGCTTTGACATTGACGCCAACGGTATTCTAAACGTTTCTGCAGAGGACAAGACCACCGGACAGAAGAATAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAGGAGATCGAGAAACTGGTTCAGGAAGCTGAGAAATTCAAGGCCGAAGATGAGGAACACAAGAAGAAAGTTGAATCAAAGAACGCGTTAGAAAACTATGCATACAACATGAGGAACACTATCAGAGATGAAAAGATAAGTGGTAAACTTGCGCCAGCAGATAAGAAGAAGATTGAAGATGCAGTCGAACAGGCCGTCCAGTGGCTAGACAGCAACCAGCTGGCTGAGTCGGATGAATTTGAAGACAAGATGAAGGAACTTGAATCTATATGCAATCCCATCATAGCCAAGATGTATCAAGGTGGTGCTGACATGGGCGGCAGCGCAATGGATGATGATGCTCCTCCTTCTGGCGGCAGCGGCGCTGGTCCTAAGATTGAAGAAGTTGATTAA | 1428 | 46.5 | MRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKISGKLAPADKKKIEDAVEQAVQWLDSNQLAESDEFEDKMKELESICNPIIAKMYQGGADMGGSAMDDDAPPSGGSGAGPKIEEVD | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 42695540 | 42696967 | - | Maker00039625 | Lcy10g1840 | 645351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g1840 | 475 | Gene3D | - | 1 | 211 | - | - | |
Lcy10g1840 | 475 | Gene3D | - | 372 | 475 | IPR029048 | - | |
Lcy10g1840 | 475 | MobiDBLite | consensus disorder prediction | 446 | 475 | - | - | |
Lcy10g1840 | 475 | FunFam | heat shock 70 kDa protein-like | 190 | 215 | - | - | |
Lcy10g1840 | 475 | ProSitePatterns | Heat shock hsp70 proteins family signature 2. | 30 | 43 | IPR018181 | - | |
Lcy10g1840 | 475 | Gene3D | Actin; Chain A, domain 4 | 63 | 145 | - | - | |
Lcy10g1840 | 475 | PRINTS | 70kDa heat shock protein signature | 36 | 46 | - | - | |
Lcy10g1840 | 475 | PRINTS | 70kDa heat shock protein signature | 196 | 216 | - | - | |
Lcy10g1840 | 475 | PRINTS | 70kDa heat shock protein signature | 223 | 242 | - | - | |
Lcy10g1840 | 475 | PRINTS | 70kDa heat shock protein signature | 304 | 320 | - | - | |
Lcy10g1840 | 475 | PRINTS | 70kDa heat shock protein signature | 164 | 180 | - | - | |
Lcy10g1840 | 475 | Gene3D | - | 19 | 193 | - | - | |
Lcy10g1840 | 475 | FunFam | Heat shock 70 kDa protein | 366 | 475 | - | - | |
Lcy10g1840 | 475 | FunFam | Heat shock cognate 70 kDa protein 2 | 146 | 189 | - | - | |
Lcy10g1840 | 475 | PANTHER | HEAT SHOCK PROTEIN 70KDA | 1 | 409 | IPR013126 | GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro) | |
Lcy10g1840 | 475 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 218 | 371 | IPR029047 | - | |
Lcy10g1840 | 475 | ProSitePatterns | Heat shock hsp70 proteins family signature 3. | 167 | 181 | IPR018181 | - | |
Lcy10g1840 | 475 | Pfam | Hsp70 protein | 1 | 445 | IPR013126 | GO:0005524(InterPro)|GO:0140662(InterPro) | |
Lcy10g1840 | 475 | Coils | Coil | 341 | 368 | - | - | |
Lcy10g1840 | 475 | FunFam | Heat shock 70 kDa | 218 | 372 | - | - | |
Lcy10g1840 | 475 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 370 | 450 | IPR029048 | - | |
Lcy10g1840 | 475 | FunFam | Heat shock 70 kDa protein | 21 | 87 | - | - | |
Lcy10g1840 | 475 | FunFam | Heat shock 70 kDa | 62 | 145 | - | - | |
Lcy10g1840 | 475 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 219 | 376 | IPR029047 | - | |
Lcy10g1840 | 475 | SUPERFAMILY | Actin-like ATPase domain | 25 | 215 | IPR043129 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1840 | Lcy-Chr10:42695540 | Lcy2g0193 | Lcy-Chr2:1510056 | 2.58E-287 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g1840 | K03283 | - | csv:101211905 | 896.345 |