Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1840 ATGCGGATCATCAATGAGCCTACAGCCGCAGCTATCGCTTATGGACTCGACAAAAAGGCAAGCAGTGTCGGCGAGAAGAATGTACTGATATTTGATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGTATTTTTGAGGTGAAGGCAACAGCCGGTGACACCCATCTCGGAGGCGAGGACTTCGACAACAGATTGGTTAACCATTTCGTTCAGGAATTCAAGAGAAAGCACAAGAAGGACATCAGTGGAAATCCGAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAGAGGGCCAAGAGGACCCTTTCATCCACTGCCCAAACTACAATCGAGATTGATTCTTTGTATGAGGGAATTGATTTCTATACAACCATCACTCGTGCTAGATTCGAGGAGCTCAACATGGACTTGTTCCGAAAGTGTATGGAGCCGGTTGAGAAGTGTCTGAGAGATGCAAAGATGGACAAAAGCACCGTCCATGATGTTGTCCTTGTTGGTGGCTCTACAAGGATTCCTAAGGTGCAGCAGCTATTGCAGGATTTCTTCAATGGCAAAGAACTCTGCAAAAGTATCAATCCTGATGAGGCAGTTGCTTATGGGGCTGCTGTCCAAGCGGCGATCTTGAGTGGTGAAGGAAATGAGAAAGTGCAGGATCTTCTTCTTTTGGATGTCACTCCTCTGTCTCTTGGTTTGGAAACTGCAGGAGGTGTGATGACAGTTTTGATTCCAAGGAATACCACCATACCCACCAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAACCTGGTGTTCTCATTCAGGTCTACGAGGGTGAGAGGACAAGAACCAGAGATAATAACTTGTTGGGCAAGTTTGAACTTTCCGGCATCCCTCCGGCTCCGAGAGGTGTTCCACAGATCACTGTCTGCTTTGACATTGACGCCAACGGTATTCTAAACGTTTCTGCAGAGGACAAGACCACCGGACAGAAGAATAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAGGAGATCGAGAAACTGGTTCAGGAAGCTGAGAAATTCAAGGCCGAAGATGAGGAACACAAGAAGAAAGTTGAATCAAAGAACGCGTTAGAAAACTATGCATACAACATGAGGAACACTATCAGAGATGAAAAGATAAGTGGTAAACTTGCGCCAGCAGATAAGAAGAAGATTGAAGATGCAGTCGAACAGGCCGTCCAGTGGCTAGACAGCAACCAGCTGGCTGAGTCGGATGAATTTGAAGACAAGATGAAGGAACTTGAATCTATATGCAATCCCATCATAGCCAAGATGTATCAAGGTGGTGCTGACATGGGCGGCAGCGCAATGGATGATGATGCTCCTCCTTCTGGCGGCAGCGGCGCTGGTCCTAAGATTGAAGAAGTTGATTAA 1428 46.5 MRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKISGKLAPADKKKIEDAVEQAVQWLDSNQLAESDEFEDKMKELESICNPIIAKMYQGGADMGGSAMDDDAPPSGGSGAGPKIEEVD 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42695540 42696967 - Maker00039625 Lcy10g1840 645351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1840 475 Gene3D - 1 211 - -
Lcy10g1840 475 Gene3D - 372 475 IPR029048 -
Lcy10g1840 475 MobiDBLite consensus disorder prediction 446 475 - -
Lcy10g1840 475 FunFam heat shock 70 kDa protein-like 190 215 - -
Lcy10g1840 475 ProSitePatterns Heat shock hsp70 proteins family signature 2. 30 43 IPR018181 -
Lcy10g1840 475 Gene3D Actin; Chain A, domain 4 63 145 - -
Lcy10g1840 475 PRINTS 70kDa heat shock protein signature 36 46 - -
Lcy10g1840 475 PRINTS 70kDa heat shock protein signature 196 216 - -
Lcy10g1840 475 PRINTS 70kDa heat shock protein signature 223 242 - -
Lcy10g1840 475 PRINTS 70kDa heat shock protein signature 304 320 - -
Lcy10g1840 475 PRINTS 70kDa heat shock protein signature 164 180 - -
Lcy10g1840 475 Gene3D - 19 193 - -
Lcy10g1840 475 FunFam Heat shock 70 kDa protein 366 475 - -
Lcy10g1840 475 FunFam Heat shock cognate 70 kDa protein 2 146 189 - -
Lcy10g1840 475 PANTHER HEAT SHOCK PROTEIN 70KDA 1 409 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Lcy10g1840 475 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 218 371 IPR029047 -
Lcy10g1840 475 ProSitePatterns Heat shock hsp70 proteins family signature 3. 167 181 IPR018181 -
Lcy10g1840 475 Pfam Hsp70 protein 1 445 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Lcy10g1840 475 Coils Coil 341 368 - -
Lcy10g1840 475 FunFam Heat shock 70 kDa 218 372 - -
Lcy10g1840 475 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 370 450 IPR029048 -
Lcy10g1840 475 FunFam Heat shock 70 kDa protein 21 87 - -
Lcy10g1840 475 FunFam Heat shock 70 kDa 62 145 - -
Lcy10g1840 475 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 219 376 IPR029047 -
Lcy10g1840 475 SUPERFAMILY Actin-like ATPase domain 25 215 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1840 Lcy-Chr10:42695540 Lcy2g0193 Lcy-Chr2:1510056 2.58E-287 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1840 K03283 - csv:101211905 896.345