Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1842 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAACCAAATCAGCTCCAAGGGAGTGGCTGTGAGACTAATACTACTCAACACCTTCCGCCTCCACCACCGCCAGCTGGCGGTGGCGGAGGCGGAGGGGGTGGCGGTGGTAGTGGTGGTGGAGGACCTGGCTCGATTAGACCTGGGTCAATGACGGATCGAGCCAGGCTGGCGAAGATACCACAACCGGAAGCCGGACTAAAATGCCCGAGATGCGAATCGACAAACACGAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAGCCGCGGCACTTCTGCAAAACGTGCCGACGGTACTGGACGAGAGGCGGGGCGATGAGGAACGTGCCGGTCGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAAAGGAGGAAGCAACAGGTCAAAGTCTCCGGCGGGTTCGAGTACTTCAACAAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCACCAATTGGCCCCTCCTCCAGCAACCCATCTGCCCTTTTTGGCTCCAAATTTACACCATCTGAGTGATTTTGGCAACATCGGTTTGAACTTTGAAGGCCTTCACATCCCTTCACTGCCATCATCAGCAGCAGGAGAATCATCGATTTTATCAAGTGGAATTTCGGATCATCACCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCACCATCAACCTGATTTCTCAAGTTACCAACGTTTGTCAAAGCCATTATTGGACAGTGGATTTAGTTCTACAGCTCATCAGCTGGGGAACAACAATAACAACAGTAGCATGAAAATCATGGAGGATACACAAGGGATTAACAGTAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAACTACAACAGCAACAGCTGGGAACATTGCATGGACTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1050 47.62 MVFSSVPVFLDPPNWPTQQPNQLQGSGCETNTTQHLPPPPPPAGGGGGGGGGGGSGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLAPPPATHLPFLAPNLHHLSDFGNIGLNFEGLHIPSLPSSAAGESSILSSGISDHHQWKIPFFANLHQQNGMYSNFMAEDHHHQPDFSSYQRLSKPLLDSGFSSTAHQLGNNNNNSSMKIMEDTQGINSNLSRNFLGIQPNDQFWNSTTTATAGNIAWTDQISDHFNSTSSTSHLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42711740 42713778 + Maker00039490 Lcy10g1842 645353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1842 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 264 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 MobiDBLite consensus disorder prediction 1 68 - -
Lcy10g1842 349 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 MobiDBLite consensus disorder prediction 143 162 - -
Lcy10g1842 349 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 Pfam Dof domain, zinc finger 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 MobiDBLite consensus disorder prediction 11 33 - -
Lcy10g1842 349 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1842 Lcy-Chr10:42711740 Lcy11g0196 Lcy-Chr11:2320838 1.32E-45 dispersed
Lcy1g1448 Lcy-Chr1:14051107 Lcy10g1842 Lcy-Chr10:42711740 1.74E-42 wgd
Lcy10g1842 Lcy-Chr10:42711740 Lcy5g0212 Lcy-Chr5:2041717 4.69E-59 wgd
Lcy10g1842 Lcy-Chr10:42711740 Lcy7g0883 Lcy-Chr7:8810273 1.02E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19031 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1842 - - - 0.0