Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1842 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAACCAAATCAGCTCCAAGGGAGTGGCTGTGAGACTAATACTACTCAACACCTTCCGCCTCCACCACCGCCAGCTGGCGGTGGCGGAGGCGGAGGGGGTGGCGGTGGTAGTGGTGGTGGAGGACCTGGCTCGATTAGACCTGGGTCAATGACGGATCGAGCCAGGCTGGCGAAGATACCACAACCGGAAGCCGGACTAAAATGCCCGAGATGCGAATCGACAAACACGAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAGCCGCGGCACTTCTGCAAAACGTGCCGACGGTACTGGACGAGAGGCGGGGCGATGAGGAACGTGCCGGTCGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAAAGGAGGAAGCAACAGGTCAAAGTCTCCGGCGGGTTCGAGTACTTCAACAAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCACCAATTGGCCCCTCCTCCAGCAACCCATCTGCCCTTTTTGGCTCCAAATTTACACCATCTGAGTGATTTTGGCAACATCGGTTTGAACTTTGAAGGCCTTCACATCCCTTCACTGCCATCATCAGCAGCAGGAGAATCATCGATTTTATCAAGTGGAATTTCGGATCATCACCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCACCATCAACCTGATTTCTCAAGTTACCAACGTTTGTCAAAGCCATTATTGGACAGTGGATTTAGTTCTACAGCTCATCAGCTGGGGAACAACAATAACAACAGTAGCATGAAAATCATGGAGGATACACAAGGGATTAACAGTAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAACTACAACAGCAACAGCTGGGAACATTGCATGGACTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1050 47.62 MVFSSVPVFLDPPNWPTQQPNQLQGSGCETNTTQHLPPPPPPAGGGGGGGGGGGSGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLAPPPATHLPFLAPNLHHLSDFGNIGLNFEGLHIPSLPSSAAGESSILSSGISDHHQWKIPFFANLHQQNGMYSNFMAEDHHHQPDFSSYQRLSKPLLDSGFSSTAHQLGNNNNNSSMKIMEDTQGINSNLSRNFLGIQPNDQFWNSTTTATAGNIAWTDQISDHFNSTSSTSHLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42711740 42713778 + Maker00039490 Lcy10g1842 645353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1842 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 264 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 MobiDBLite consensus disorder prediction 1 68 - -
Lcy10g1842 349 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 MobiDBLite consensus disorder prediction 143 162 - -
Lcy10g1842 349 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 Pfam Dof domain, zinc finger 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy10g1842 349 MobiDBLite consensus disorder prediction 11 33 - -
Lcy10g1842 349 MobiDBLite consensus disorder prediction 125 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1842 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1842 Lcy-Chr10:42711740 Lcy11g0196 Lcy-Chr11:2320838 1.32E-45 dispersed
Lcy1g1448 Lcy-Chr1:14051107 Lcy10g1842 Lcy-Chr10:42711740 1.74E-42 wgd
Lcy10g1842 Lcy-Chr10:42711740 Lcy5g0212 Lcy-Chr5:2041717 4.69E-59 wgd
Lcy10g1842 Lcy-Chr10:42711740 Lcy7g0883 Lcy-Chr7:8810273 1.02E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT1G29160 52.7 7.7e-43 171.0
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.2e-41 165.6
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT2G34140 53.4 4.4e-43 171.8
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT2G34140 50.3 9.4e-38 154.1
Lcy10g1842 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 67.4 1.4e-37 154.5
Lcy11g0196 . 66 140 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.1e-37 152.9
Lcy2g0570 . 140 491 C2C2-Dof Transcription Factor Family AT3G47500 53.4 2.4e-88 323.6
Lcy10g0543 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.4 6.7e-75 278.9
Lcy11g0196 . 65 140 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.6e-38 157.1
Lcy1g1448 . 54 127 C2C2-Dof Transcription Factor Family AT5G02460 87.8 8.4e-37 152.1
Lcy5g0212 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.7e-37 153.7
Lcy2g0489 . 28 323 C2C2-Dof Transcription Factor Family AT5G60850 54.1 5.8e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19031 None None None None Lcy TF