Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1858 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTTGGCCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACGTTCTATAACGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTCTATGCCAGTGGTCGAACGACTGGAATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTCCCCATTTATGAGGGCTATGCTCTCCCACACGCCATTCTTCGACTTGACCTTGCTGGCCGTGATCTCACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGAGATATGAAGGAAAAACTTTCATATATTGCCCTGGACTATGAACAGGAACTTGAAACTTCCAAGACCAGCTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCCGAGCGTTTTAGGTGCCCGGAAGTACTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACTACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATCGTCCTCTCCGGTGGTTCGACCATGTTTACGGGTATCGCTGATAGAATGAGCAAGGAGATCTCCGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAATACAGTGTCTGGATTGGAGGTTCAATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1134 47.71 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42794633 42797164 + Maker00039201 Lcy10g1858 645369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1858 377 Gene3D - 140 340 - -
Lcy10g1858 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lcy10g1858 377 PRINTS Actin signature 51 62 IPR004000 -
Lcy10g1858 377 PRINTS Actin signature 238 254 IPR004000 -
Lcy10g1858 377 PRINTS Actin signature 63 85 IPR004000 -
Lcy10g1858 377 PRINTS Actin signature 142 161 IPR004000 -
Lcy10g1858 377 PRINTS Actin signature 28 37 IPR004000 -
Lcy10g1858 377 PRINTS Actin signature 117 130 IPR004000 -
Lcy10g1858 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lcy10g1858 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lcy10g1858 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lcy10g1858 377 Pfam Actin 5 377 IPR004000 -
Lcy10g1858 377 SMART actin_3 7 377 IPR004000 -
Lcy10g1858 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy10g1858 377 FunFam Actin, muscle 182 273 - -
Lcy10g1858 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Lcy10g1858 377 FunFam Actin, alpha skeletal muscle 3 173 - -
Lcy10g1858 377 Gene3D - 10 371 - -
Lcy10g1858 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Lcy10g1858 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lcy10g1858 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lcy10g1858 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1858 Lcy-Chr10:42794633 Lcy5g0597 Lcy-Chr5:6867794 2.60E-273 dispersed
Lcy10g1858 Lcy-Chr10:42794633 Lcy7g0882 Lcy-Chr7:8799316 1.14E-257 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1858 K10355 - csv:101220611 745.732