Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1867 CTTCACTCTCTCTCTGCAATGGCGCCAACTATTTCAACGACCTTTCAGATATCATTCTCTTTGCTGCTAATAATGTCGTCGTTTGCTGTAGAAGCCAGAGAACTTACCGGAGTTTACGGCGGCGGGCCGTGGCAGAGCGCCCACGCCACGTTCTACGGTGGCAATGACGCCTCCGGCACTATGGGCGGGGCGTGTGGTTATGGCAACTTGTACAGCCAGGGCTACGGCGTGAACACGGCGGCGCTCAGCACCGCCCTGTTCAACGACGGCTACAGCTGCGGAGCCTGTTTCGAAATCAAGTGCGTGAATGACCCGCAATGGTGTCACGCCGGTAACCCCTCAATCTTCGTCACCGCCACCAACTTTTGTCCTCCCAATTACGCTCTGCCTAATGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTCCTCAAAATCGCTCAATACCGTGCCGGGATCGTCCCCGTCTCCTTCCGCAGGGTTGCATGCAGGAAGGAGGGAGGGATGAGGTTTACGATCAATGGGTTCAAGTATTTCAATTTGGTATTGATAACCAACGTGGCAGGTGCAGGGGATATTGTGAGTGTGAGCATCAAGGGATCGAGGACAGGGTGGACAAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGCCGTTTTGGTGGGTCAATCACTTTCTTTTAGTGTCAAAGCCAGCGATGGAAGGATTTCAACTTCCTCCAATATTGTTCCTTCTGATTGGCAGTTTGGTCAAACTTTCACAGGCAAAAACTTCAGATTCTGA 813 52.64 LHSLSAMAPTISTTFQISFSLLLIMSSFAVEARELTGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRKEGGMRFTINGFKYFNLVLITNVAGAGDIVSVSIKGSRTGWTSMTRNWGQNWQSNAVLVGQSLSFSVKASDGRISTSSNIVPSDWQFGQTFTGKNFRF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42862024 42863052 - Maker00039350 Lcy10g1867 645378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1867 270 Gene3D - 177 268 IPR036749 -
Lcy10g1867 270 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576(InterPro)
Lcy10g1867 270 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576(InterPro)
Lcy10g1867 270 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576(InterPro)
Lcy10g1867 270 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
Lcy10g1867 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576(InterPro)
Lcy10g1867 270 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy10g1867 270 CDD DPBB_EXPA_N 43 171 - -
Lcy10g1867 270 PANTHER EXPANSIN-A15 21 268 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 Pfam Expansin C-terminal domain 177 254 IPR007117 -
Lcy10g1867 270 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Lcy10g1867 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 265 IPR007117 -
Lcy10g1867 270 PRINTS Expansin signature 74 88 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 115 125 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 151 164 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 251 267 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 101 112 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 134 151 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 175 187 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 187 208 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 PRINTS Expansin signature 222 243 IPR002963 GO:0009664(InterPro)
Lcy10g1867 270 FunFam Expansin 176 268 - -
Lcy10g1867 270 SMART dpbb_1 79 166 IPR007112 -
Lcy10g1867 270 Pfam Lytic transglycolase 79 166 IPR009009 -
Lcy10g1867 270 Gene3D - 30 172 IPR036908 -
Lcy10g1867 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 176 IPR007112 -
Lcy10g1867 270 SUPERFAMILY Barwin-like endoglucanases 43 194 IPR036908 -
Lcy10g1867 270 FunFam Expansin 33 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1867 Lcy-Chr10:42862024 Lcy1g1434 Lcy-Chr1:13900248 6.66E-158 dispersed
Lcy10g1867 Lcy-Chr10:42862024 Lcy7g0893 Lcy-Chr7:8939840 4.44E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1867 - - - 0.0