Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1880 ATGGCGGCTTCTCTTTGCTGCTTTTTGCTTCTTTTTTCTGTCTCTTTCTTGTTGACTGCTCCAACTTCTGCTTCCTCGTTGGCTGATGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATAAATTCATCAAGAAGAAACTTAGGATATTTCTCCTGCGGAACCGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGCAAGCGCCTGGCCGACTGCGCCATCGGCTTCGGCAAGAACGCCATCGGCGGCAGAAACGGCCGCTTCTACGTGGTCACCGACTCCGGCGACGACGACCCTCTCAACCCCCGCCCGGGAACCCTCCGCCACGCCGTCATCCAAAACGAGGCCCTGTGGATCATCTTCAAACGCGACATGGTCATCCAACTCAGGCAGGAGCTGGTGATGAACTCGTTCAAGACCATCGACGGCCGTGGGGCCAGCGTCCACGTGGCCGGTGGGCCATGCATAACGATCCACTACGCGACGAACATCATCCTACATGGCATCCACATACACGACTGCAAGAGAGGGGGGAATGGTAACATACGGGACTCCCCACAGCACTCCGGGTGGTGGACCGTATCGGACGGCGACGGAGTCTCGATCTTCGGCGGGCGGCATATCTGGGTTGACCACTGTTCTTTGTCGAATTGCAATGATGGGTTGATCGACGCGATTCATGGATCCACTGCTATTACTATTTCGAATAATTATATGACTCATCATGATAAGGTGATGCTGTTGGGACACAGTGACTCTTATACTCAAGACAAGGATATGCAGGTTACCATTGCTTTCAACCATTTTGGTGAGGGCCTCGTCCAACGAATGCCAAGATGCAGACACGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAGATGTACGCAATCGGAGGGAGTGCTTCGCCGACAATATACAGCCAAGGCAACAGATTTTTGGCGCCGGACAACCGCTTCCGAAAGCAGGTGACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGGTCGGAGGGCGACATGATGTTGAACGGCGCCTATTTCCTGCAGTCGGGCGCCGGCGCCGCCTCCAGCTACGCCAGAGCTTACAGCCTCAGCGCTAGACCGTCCTCTCTCGTCGGCTCTATCACCGTCACCGCCGGAGCCCTCAACTGCCGCAGAGGCTCCCGCTGCTAG 1227 55.5 MAASLCCFLLLFSVSFLLTAPTSASSLADVQDPHLVVQEVQRSINSSRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDSGDDDPLNPRPGTLRHAVIQNEALWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIILHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGRHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDNRFRKQVTKHEDAPESEWRHWNWRSEGDMMLNGAYFLQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42959838 42962742 - Maker00039337 Lcy10g1880 645391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1880 408 PANTHER PECTATE LYASE 18-RELATED 18 405 IPR045032 GO:0030570(InterPro)
Lcy10g1880 408 SMART amb_all 134 331 IPR002022 -
Lcy10g1880 408 Gene3D - 59 401 IPR012334 -
Lcy10g1880 408 Pfam Pectate lyase 140 325 IPR002022 -
Lcy10g1880 408 SUPERFAMILY Pectin lyase-like 44 403 IPR011050 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Lcy10g1880 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Lcy10g1880 408 FunFam Pectate lyase 59 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1880 Lcy-Chr10:42959838 Lcy13g1730 Lcy-Chr13:36269656 5.28E-240 dispersed
Lcy10g1880 Lcy-Chr10:42959838 Lcy12g2053 Lcy-Chr12:41846793 4.77E-213 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1880 K01728 - csv:101217834 748.429