Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g1896 | ATGTCGCATTGGCCTGAGCTTCCTGTGAATTTAATCATAAAATGGATGAAAGAGCACGATCCTTCATTTATTGTGGCTGATTTTGGCTGTGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTAGTTTCTAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATGTAAGCACGTATTTGAACTTAATGTCATCGGATGCATTGAGAATTACAACTGCATTTCCGCATTTTACACCTCTTGACTCTTCATCTGTTGATGTTGCTGTCTTTTGCCTTTCACTCATGGGGGTCAATTATGCAAGTTACTTGGCGGAAGCACAAAGAGTACTTAAACCACGTGGCTGGCTTTTAATAGCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGTGCCGATCCCAATAAGTTCATGAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGACTTCTCAAATAAGATGTTCATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTCTAAGGGGAAAGATATTGATTGGCCCCAGCTAAAACCTTGTTTGTACAAACGTCACCCAGTTCCTTCTGCGGCTTTTCTTTTTCCTGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTACGAAAGTACTTGTTGAGTATACGGCCAAGGTGCTTGGACTTGCACGAGGCAGCTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCCTGCATTCCCATGGGATCATCCACCGCGATCTCAAACCTGAGAATTTGATCTTGACCGGAGACCACAAAACTGTTAAGCTTACAGACTTTGGTCTGGCTAGAGAAGAGTCGGTAACAGAGATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTTTACAGTACAGTCACTTTAAGAAATGGGGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTGTTCAAAATAAGTTGCCTTTTGAAGGCATGTCGAATCTACAAGCAGCGTATGCAGCTGCTTTTAAGAATTTACGTCCGAGCGCTGAGAACCTCCCAGAAGATTTGGCCCCCATTATAACTTCCTGTTGGACGGAGGATCCGAACGCTCGGCCTAACTTCAGCCAAATCATACAGATGCTTTTGAAATATCTATCCACCATTCCACAACCAGAGTATGTCGCACCACCAATAATGCACCCGCCTGAGAATGCAGTGCTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAGCCACAAGGCGTGGCACCGGGGAAGTCCCGAACGGTGGGATGGAAGAGAAACCGAGCAGTTTCTTCTCCTGTTTCACTGTTTGTGTTTCTGGGCCGATTGAACTTTTGTGCCAAGATGATGGGTTTTGTTTCATTTTTCTTAAATGTGAAGTTGATTGCTTGGTGATGGCATTTGAGAGCTTGATCATTCGCATTAATGGCAGAGCTGAGCATGTCCCACCAGCCCAACAAGATCCTTTGAGGTTAAGAAATAGGGGGAATCTCCTGTTCTCAACATTTTTGGGTTTTGAAATTTGCCTCGCGAGATTAGTCATCGGGCCTGGATTCTCGAGGTCTTGGATCTTTGATAGCCGAACAATTGCAAGAAAAGTCAGAAACATCAGTCAATCTTCTTCGCAAGTAATTAAAGATTGTGACGCAAAACGAGAATGTCCAAACTGTCACTTCATTATTGATAATACAGATGTTTTTCCTGAATGGCCTGGTTTGCCTGTTGGTGTTAAGTTTGATCCAACTGATGAAGAAATAATGGATCACTTAGCGGCGAAGTGTGCCGTTGGGAACTTAAAGCCACATGCATTAATTGATGAATTCATACCCACACTCGAAACAGATCAAGGAATCTGTTACACTCATCCAGAAAATCTCCCCGGTGTTTGTAAAGATGGAAGTGATGTCCATTTCTTTCACAAAACAAGCAATGCATATGCCACGGGTCAAAGGAAGCGCCGCAAGATTGAAAGTGAACATAATTCAAGCCTTGAACATTTTCGCTGGCACAAGACAGGTAGGACCAAAGCTGTGATTGAAAATGGTGTTCATAAGGGATGGAAGAAGATATTCTCTCTGTACAGAAGTTCAAAGGGAGGCTCGAAGCCCGAAAAGTCTAACTGGGTGATACATCAATATCATTTGGGAACCGCAGAAGATGAGAAGGAAGGCGAATACGTGTTGTCAAAGATTTCTTATCAGCAACCAAAGCAATGTAATAAGAGCAATGATAATATGCTCATTGAGGATTTTGATGCTATGCTCCATCAAACTAGTCCTAGAACTCCCAAGTCGAATCCTCCGATTCCACCTCGACCGGGAAAATCATCGGTCTCCAATGCTGTCGCTGACAATGATCTGCCTCAATCATTTGCAAAGGAAGAAGAGTTGACTCCGGAGGCATCTCGCGTTTCTTATCCTAATATTTCATCGGAGAACGACATGGGGTACCCGACATGGTTGGCTGGAGAATCTCAGGGTATAGATGATGTTGAATTACATTACTTGGAAGACAACTTATTGTGCGATGAAGTCTTGGATTCTGGTGCTTTTATAAGTAACAGCCAATCAAATCAAATGTCTTTCCCTCTCTCCGATAGCAATGCTTGCCACGAGATGGCGAGCAGTAACATTCCGTGCGGAATTGCAGATCTTGAGAACCTTGAATTGGATACTCCACCTGATTTTCATCTTGCTGACCTGCAGTTTGGTTCTCAAGAGAGCATTTTCGACTGGATCGATAGGATATAA | 2841 | 43.29 | MSHWPELPVNLIIKWMKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNVSTYLNLMSSDALRITTAFPHFTPLDSSSVDVAVFCLSLMGVNYASYLAEAQRVLKPRGWLLIAEVKSRFDPSNGGADPNKFMKAVCELGFVSALKDFSNKMFILLYFKKKDEKISKGKDIDWPQLKPCLYKRHPVPSAAFLFPGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLHEAAGFALDIARAMECLHSHGIIHRDLKPENLILTGDHKTVKLTDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIVQNKLPFEGMSNLQAAYAAAFKNLRPSAENLPEDLAPIITSCWTEDPNARPNFSQIIQMLLKYLSTIPQPEYVAPPIMHPPENAVLPPESPGTSSLMAATRRGTGEVPNGGMEEKPSSFFSCFTVCVSGPIELLCQDDGFCFIFLKCEVDCLVMAFESLIIRINGRAEHVPPAQQDPLRLRNRGNLLFSTFLGFEICLARLVIGPGFSRSWIFDSRTIARKVRNISQSSSQVIKDCDAKRECPNCHFIIDNTDVFPEWPGLPVGVKFDPTDEEIMDHLAAKCAVGNLKPHALIDEFIPTLETDQGICYTHPENLPGVCKDGSDVHFFHKTSNAYATGQRKRRKIESEHNSSLEHFRWHKTGRTKAVIENGVHKGWKKIFSLYRSSKGGSKPEKSNWVIHQYHLGTAEDEKEGEYVLSKISYQQPKQCNKSNDNMLIEDFDAMLHQTSPRTPKSNPPIPPRPGKSSVSNAVADNDLPQSFAKEEELTPEASRVSYPNISSENDMGYPTWLAGESQGIDDVELHYLEDNLLCDEVLDSGAFISNSQSNQMSFPLSDSNACHEMASSNIPCGIADLENLELDTPPDFHLADLQFGSQESIFDWIDRI | 946 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 43096822 | 43113615 | - | Maker00039381 | Lcy10g1896 | 645407 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g1896 | 946 | Gene3D | Vaccinia Virus protein VP39 | 7 | 196 | IPR029063 | - | |
| Lcy10g1896 | 946 | FunFam | NAC domain-containing protein 8 | 612 | 768 | - | - | |
| Lcy10g1896 | 946 | SUPERFAMILY | Protein kinase-like (PK-like) | 208 | 431 | IPR011009 | - | |
| Lcy10g1896 | 946 | SUPERFAMILY | NAC domain | 589 | 764 | IPR036093 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy10g1896 | 946 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 414 | - | - | |
| Lcy10g1896 | 946 | CDD | STKc_MAP3K-like | 195 | 402 | - | - | |
| Lcy10g1896 | 946 | SMART | serkin_6 | 145 | 406 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 262 | 274 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | MobiDBLite | consensus disorder prediction | 787 | 812 | - | - | |
| Lcy10g1896 | 946 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 5 | 132 | IPR029063 | - | |
| Lcy10g1896 | 946 | CDD | AdoMet_MTases | 25 | 125 | - | - | |
| Lcy10g1896 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 330 | 352 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 218 | 231 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 373 | 395 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 256 | 274 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | PANTHER | NAC DOMAIN-CONTAINING PROTEIN 73 | 551 | 940 | IPR044799 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
| Lcy10g1896 | 946 | ProSiteProfiles | Protein kinase domain profile. | 96 | 406 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | Pfam | Protein tyrosine and serine/threonine kinase | 207 | 402 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy10g1896 | 946 | ProSiteProfiles | NAC domain profile. | 603 | 764 | IPR003441 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy10g1896 | 946 | Pfam | No apical meristem (NAM) protein | 604 | 745 | IPR003441 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy10g1896 | 946 | Gene3D | NAC domain | 612 | 769 | IPR036093 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy10g1896 | 946 | Pfam | Hypothetical methyltransferase | 3 | 195 | IPR007823 | GO:0008168(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1896 | Lcy-Chr10:43096822 | Lcy2g0117 | Lcy-Chr2:885342 | 3.48E-133 | dispersed | |
| Lcy7g0416 | Lcy-Chr7:3575477 | Lcy10g1896 | Lcy-Chr10:43096822 | 4.38E-82 | transposed | |
| Lcy10g0161 | Lcy-Chr10:2211542 | Lcy10g1896 | Lcy-Chr10:43096822 | 1.47E-135 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19033 | None | None | None | None | Lcy | TF | |
| 65410 | None | None | None | None | Lcy | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g1896 | - | - | - | 0.0 |