Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1903 ATGGCTTCTTCAAGCTACTCAAACTCTCCATGTGCAGCATGCAAGTTCCTAAGAAGAAAATGCCTAGCAGACTGCATATTTGCGCCCTACTTTCCACCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTGAATTCTCTAGCCTACGAGGCCGAGGCTCGCATGAAAGACCCCGTCTACGGCTGCGTCGGGGCAATCTCCGTTCTACAACGACAAGTCATTCGCCTGCAGAAGGAGCTCGATGCTACGAATGCTGATTTGGTACGATATGCCAGCGGGGGCGGGCGCCCGCTCTCGCAATTTGGAAGAAGGGCAACCGCGGCCGCGACGGGGCGACATCATTCCGGTGTATGTTTTGTTTCTCCCTTGGGTACTAATGATCATGATGATACTTATTGCCATGATAAAGAGGAAGGTAATTGA 492 52.03 MASSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGGGRPLSQFGRRATAAATGRHHSGVCFVSPLGTNDHDDTYCHDKEEGN 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43176159 43176650 + Maker00039369 Lcy10g1903 645414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1903 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 114 - -
Lcy10g1903 163 Coils Coil 89 109 - -
Lcy10g1903 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lcy10g1903 163 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1903 Lcy-Chr10:43176159 Lcy2g0127 Lcy-Chr2:981291 3.57E-67 dispersed
Lcy10g0181 Lcy-Chr10:2497599 Lcy10g1903 Lcy-Chr10:43176159 1.67E-75 wgd
Lcy10g1903 Lcy-Chr10:43176159 Lcy5g2196 Lcy-Chr5:45039484 2.97E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19034 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1903 - - - 0.0