Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1913 ATGCAGAGTTCTGTGTTGGCTCTGGCTATGTCTTTTTCCCCTAATACTACTGCTAGGGCTACTGATATTCCATTGCCTCTACTTCCATGCCGAATTCGAAGCCCTAATTTCCCTCACTTTTCGCACATTGTTCCGTTTCGTTCTCGCGGAGGTTTGATCTCATGGCGCCCTTCCTTCTCCTCCTCCTCGATCTCTGTTTCTTCTCCCGGATTCAGTCCGAGGCTCGACAAATTCACCGTAATGGCGGCTTCCGTGCCGGAGAGCGCCGGCGAGGCGGTGGAATCGGTCGATTTCATCAACAATGTGCGGCTTGGTGCAATGTTTGGTGTTTGGTACCTTTTGAATATCTACTACAACATTTTCAACAAACAGGTTCTGAAAGCCTTTCCCTTTCCAACTACGGTGACAGCTTTTCAGTTCGGCTGTGGGACGCTGATAGTAAGCTTAATGTGGGCTCTTAATTTTCATCCCAAACCCAAGATCAATCGATCTCAGTTTGCAGCCATTCTTCCGCTGGCTGTAGCCCACACAATGGGAAACATATTGACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTTCTGCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCACGTTGTGGGTTGTTCTTTCTCTCGTACCCGTTGTAGGAGGAGTGGCACTCGCATCTTTTACTGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCCATGGCTTCAAATCTCACAAATCAATCTCGTAATATCTTCAGCAAAAAGTTCATGGTTCACAAAGAGGCATTGGACAATATCAATCTCTTCTCTGTAATTACTATCATTTCGTTTATCTTCTTGGTTCCCTCGGCTCTTCTCCTTGAAGGCACTAAATTAAGTCCTTCATACCTGCAATCAGCTGCAAATCAAGGATTGAATGTCAGAGAGCTAGGCATTAGGTTGCTTCTTTCTGGCATCTGTTTTCATAGTTATCAGCAGGTTTCTTATTCAATACTACAGGAAATTTCACCAGTGACCCATGCAGTAGGAAATTCTCTGAAGCGGGTGGTGGTCATAGTATCCTCAGTTATTTTCTTCCAAACAGCCGTTTCACCTCTAAACGCCTTAGGAACTGGCATAGCTCTGATGGGAGTTTTCTTGTATTCAAGGGCAAAGCGTATGAAGCCAAAGCTGAAGGCTGTGTAA 1221 45.45 MQSSVLALAMSFSPNTTARATDIPLPLLPCRIRSPNFPHFSHIVPFRSRGGLISWRPSFSSSSISVSSPGFSPRLDKFTVMAASVPESAGEAVESVDFINNVRLGAMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTLIVSLMWALNFHPKPKINRSQFAAILPLAVAHTMGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPTLWVVLSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKFMVHKEALDNINLFSVITIISFIFLVPSALLLEGTKLSPSYLQSAANQGLNVRELGIRLLLSGICFHSYQQVSYSILQEISPVTHAVGNSLKRVVVIVSSVIFFQTAVSPLNALGTGIALMGVFLYSRAKRMKPKLKAV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43243382 43252593 + Maker00039448 Lcy10g1913 645424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1913 406 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 403 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy10g1913 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Lcy10g1913 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 318 399 - -
Lcy10g1913 406 Pfam Triose-phosphate Transporter family 103 394 IPR004853 -
Lcy10g1913 406 PANTHER SOLUTE CARRIER FAMILY 35 101 397 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1913 Lcy-Chr10:43243382 Lcy11g1868 Lcy-Chr11:42446244 8.38E-80 dispersed
Lcy10g1913 Lcy-Chr10:43243382 Lcy5g2217 Lcy-Chr5:45175789 2.85E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1913 K15283 - csv:101217436 629.787