Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1923 ATGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGTCTGGGAAGTATTACATGGTCGGGTGAATACTCAAGATCAGATCCAAAGGTTCTCCTCCTTCGTGTTGCAGCCGCTGTGATGGAAGCCGTTGGAAAGGTGGCAGGAAAGGTAGTGAATGTAAAGTTGGGGAATTTTCCTGAGCAAGCACATGCAAGGAAGGTTGGAATTGGGTGGGGCTTCCAAGAGACATGGAAGAGTTGTAAGCTGGCACTGATGGAAGGTTTACATGATGGTATGCGAGCTGCCATTGCACTGCAATGGGAAAAGTTTGAGAGAATGCTGGGTCTAGAGCATCTTTCAACCTCCTACATTTTGTCAGAAATTATGGATAATTCTTCAGAAAAAAGATATCCAGTGAATGCAAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTGAATGAGGTTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACCATGACTTTGATTGATCATCCGAATTTATTAAGAGCACATTGTTCCTTCACAGCCGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGTCTTCATATTATGAAATCTGCTTATCCTGAAGGTTTTGACGAGCCTGTCATTGCCACTCTATTGCGGGAGGTTCTGAAAGCTCTCGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACTGTCAAGTTAGCTGATTTTGGAGTCTCAGCTTGCATGTTCGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCAAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGATTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGGCCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAGCATGCCCGTTCAGTTGATTATCTTACTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGTTTTAAGAATCTCAAGGTAAAAGAGGCTGATCTTTTGGGGCAGAACAAGGCTTTATACGGGGACAAGGAGCATTTGTCACAGATGCATGCTTGTGCTATTGTCTGGGGCCTTTCAGCCTTGGCCCCTAGATTTCAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTCGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAATATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAAGATTAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAGGCTGAATCATCCAACTGCTGCAGCTAGTCTGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTATGAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTTAGAGAATAAGAGGTCTTTCAGTGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATCATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACATTTCATCTGTTGAGGATACATCAGATGGAACTGTTGTTCAACGTAAGGGGCGGTTTAAAGTTACTTCGGCAGAGCTCAGTCCAAAGGTATTTTTGCATTAA 2073 42.16 MEGQNSQESEVLCLGSITWSGEYSRSDPKVLLLRVAAAVMEAVGKVAGKVVNVKLGNFPEQAHARKVGIGWGFQETWKSCKLALMEGLHDGMRAAIALQWEKFERMLGLEHLSTSYILSEIMDNSSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEVVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYPEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLDPLGERFKNLKVKEADLLGQNKALYGDKEHLSQMHACAIVWGLSALAPRFQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNKINDFSFPVEGSSLERLNHPTAAASLEDGFSDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSMRPVDRENGRTEGESSGQSGSLPRHYMLENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNISSVEDTSDGTVVQRKGRFKVTSAELSPKVFLH 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43335639 43345270 - Maker00039882 Lcy10g1923 645434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1923 690 MobiDBLite consensus disorder prediction 575 600 - -
Lcy10g1923 690 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 127 685 IPR047173 GO:0043539(InterPro)
Lcy10g1923 690 SUPERFAMILY Protein kinase-like (PK-like) 134 431 IPR011009 -
Lcy10g1923 690 Pfam Protein kinase domain 137 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1923 690 FunFam Serine/threonine-protein kinase BLUS1 126 214 - -
Lcy10g1923 690 FunFam serine/threonine-protein kinase BLUS1 isoform X1 218 451 - -
Lcy10g1923 690 ProSiteProfiles Protein kinase domain profile. 137 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1923 690 CDD STKc_OSR1_SPAK 135 398 - -
Lcy10g1923 690 Gene3D Phosphorylase Kinase; domain 1 125 213 - -
Lcy10g1923 690 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524(InterPro)
Lcy10g1923 690 Gene3D Transferase(Phosphotransferase) domain 1 218 424 - -
Lcy10g1923 690 SMART serkin_6 137 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1923 K08835 - - csv:101205102 1063.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1923 Lcy-Chr10:43335639 Lcy12g0509 Lcy-Chr12:6116736 5.73E-166 dispersed
Lcy12g0483 Lcy-Chr12:5868214 Lcy10g1923 Lcy-Chr10:43335639 1.53E-09 dispersed
Lcy10g1923 Lcy-Chr10:43335639 Lcy10g1182 Lcy-Chr10:34420572 1.06E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1314 . 1 697 MAP Kinase Kinase Kinase Kinase AT1G53165 62.0 1.8e-220 763.1
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT1G53165 51.4 1.6e-64 245.0
Lcy9g1314 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.6 2.0e-232 802.7
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT3G15220 51.0 9.6e-65 245.7
Lcy7g0345 . 4 909 MAP Kinase Kinase Kinase Kinase AT1G69220 55.9 5.1e-235 811.6
Lcy9g1314 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.1e-67 253.8
Lcy10g1923 . 122 686 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 5.8e-216 748.0
Lcy6g2295 . 7 853 MAP Kinase Kinase Kinase Kinase AT4G24100 54.8 6.9e-231 797.7
Lcy10g1923 . 127 514 MAP Kinase Kinase Kinase Kinase AT4G24100 60.2 1.6e-134 477.6
Lcy6g2295 . 11 854 MAP Kinase Kinase Kinase Kinase AT4G10730 55.0 2.3e-231 799.3
Lcy10g1923 . 122 490 MAP Kinase Kinase Kinase Kinase AT1G70430 69.6 3.0e-147 519.6
Lcy12g0509 . 1 658 MAP Kinase Kinase Kinase Kinase AT1G79640 57.7 7.0e-206 714.5
Lcy10g1923 . 127 683 MAP Kinase Kinase Kinase Kinase AT1G79640 50.9 5.4e-150 528.9
Lcy10g1923 . 122 455 MAP Kinase Kinase Kinase Kinase AT1G23700 58.5 5.6e-104 375.6
Lcy11g1629 . 33 492 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 7.3e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65411 None None None None Lcy PK