Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1923 ATGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGTCTGGGAAGTATTACATGGTCGGGTGAATACTCAAGATCAGATCCAAAGGTTCTCCTCCTTCGTGTTGCAGCCGCTGTGATGGAAGCCGTTGGAAAGGTGGCAGGAAAGGTAGTGAATGTAAAGTTGGGGAATTTTCCTGAGCAAGCACATGCAAGGAAGGTTGGAATTGGGTGGGGCTTCCAAGAGACATGGAAGAGTTGTAAGCTGGCACTGATGGAAGGTTTACATGATGGTATGCGAGCTGCCATTGCACTGCAATGGGAAAAGTTTGAGAGAATGCTGGGTCTAGAGCATCTTTCAACCTCCTACATTTTGTCAGAAATTATGGATAATTCTTCAGAAAAAAGATATCCAGTGAATGCAAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTGAATGAGGTTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACCATGACTTTGATTGATCATCCGAATTTATTAAGAGCACATTGTTCCTTCACAGCCGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGTCTTCATATTATGAAATCTGCTTATCCTGAAGGTTTTGACGAGCCTGTCATTGCCACTCTATTGCGGGAGGTTCTGAAAGCTCTCGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACTGTCAAGTTAGCTGATTTTGGAGTCTCAGCTTGCATGTTCGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCAAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGATTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGGCCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAGCATGCCCGTTCAGTTGATTATCTTACTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGTTTTAAGAATCTCAAGGTAAAAGAGGCTGATCTTTTGGGGCAGAACAAGGCTTTATACGGGGACAAGGAGCATTTGTCACAGATGCATGCTTGTGCTATTGTCTGGGGCCTTTCAGCCTTGGCCCCTAGATTTCAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTCGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAATATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAAGATTAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAGGCTGAATCATCCAACTGCTGCAGCTAGTCTGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTATGAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTTAGAGAATAAGAGGTCTTTCAGTGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATCATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACATTTCATCTGTTGAGGATACATCAGATGGAACTGTTGTTCAACGTAAGGGGCGGTTTAAAGTTACTTCGGCAGAGCTCAGTCCAAAGGTATTTTTGCATTAA 2073 42.16 MEGQNSQESEVLCLGSITWSGEYSRSDPKVLLLRVAAAVMEAVGKVAGKVVNVKLGNFPEQAHARKVGIGWGFQETWKSCKLALMEGLHDGMRAAIALQWEKFERMLGLEHLSTSYILSEIMDNSSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEVVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYPEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLDPLGERFKNLKVKEADLLGQNKALYGDKEHLSQMHACAIVWGLSALAPRFQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNKINDFSFPVEGSSLERLNHPTAAASLEDGFSDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSMRPVDRENGRTEGESSGQSGSLPRHYMLENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNISSVEDTSDGTVVQRKGRFKVTSAELSPKVFLH 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43335639 43345270 - Maker00039882 Lcy10g1923 645434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1923 690 MobiDBLite consensus disorder prediction 575 600 - -
Lcy10g1923 690 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 127 685 IPR047173 GO:0043539(InterPro)
Lcy10g1923 690 SUPERFAMILY Protein kinase-like (PK-like) 134 431 IPR011009 -
Lcy10g1923 690 Pfam Protein kinase domain 137 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1923 690 FunFam Serine/threonine-protein kinase BLUS1 126 214 - -
Lcy10g1923 690 FunFam serine/threonine-protein kinase BLUS1 isoform X1 218 451 - -
Lcy10g1923 690 ProSiteProfiles Protein kinase domain profile. 137 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1923 690 CDD STKc_OSR1_SPAK 135 398 - -
Lcy10g1923 690 Gene3D Phosphorylase Kinase; domain 1 125 213 - -
Lcy10g1923 690 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524(InterPro)
Lcy10g1923 690 Gene3D Transferase(Phosphotransferase) domain 1 218 424 - -
Lcy10g1923 690 SMART serkin_6 137 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1923 Lcy-Chr10:43335639 Lcy12g0509 Lcy-Chr12:6116736 5.73E-166 dispersed
Lcy12g0483 Lcy-Chr12:5868214 Lcy10g1923 Lcy-Chr10:43335639 1.53E-09 dispersed
Lcy10g1923 Lcy-Chr10:43335639 Lcy10g1182 Lcy-Chr10:34420572 1.06E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65411 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1923 K08835 - csv:101205102 1063.91