Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1929 ATGATATATAAGTTTAATCATTTATTCATATTCTCATTAGGGCCGCTCCCAAAGCAAGAATGCAAAAGCATCTTCGCTACGAGAGGATGCAAGTTTTGCTTGGCCATCGTTGACAATTCTTATTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCAGGAGTAAATTCAGGGCTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCGTCATCGATAGCGGAAGAACTCGAGGTTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTGGTTGATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTACGAGACGACGGGGATTCGTCCAGAACACTTTAGGGATGCAATGCTGCTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTACGTGGAAGACGATCTCAAACGTCTTCAAATCGGATATCCATCCATCATGATAAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGATTTGACACTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTGTGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCCAGGATTTGA 897 43.48 MIYKFNHLFIFSLGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43394020 43395754 + Maker00039191 Lcy10g1929 645440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1929 298 SUPERFAMILY Ribonuclease H-like 100 246 IPR012337 -
Lcy10g1929 298 SMART exoiiiendus 84 249 IPR013520 -
Lcy10g1929 298 Gene3D - 82 262 IPR036397 GO:0003676(InterPro)
Lcy10g1929 298 CDD REX4_like 86 241 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Lcy10g1929 298 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 16 296 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Lcy10g1929 298 Pfam Exonuclease 101 223 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1929 Lcy-Chr10:43394020 Lcy12g2216 Lcy-Chr12:43368544 1.05E-74 dispersed
Lcy10g1929 Lcy-Chr10:43394020 Lcy10g1930 Lcy-Chr10:43403679 4.42E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1929 - - - 0.0