Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1930 ATGGGCGGGCGTTTTGGGAACTTGGGAATAATTTGTGACAAGTTGACGATGGACAATGGCCGCACAAAGCGCAACGAAGCAGTGGCGTTGGCTTGCAGAATGGTCGGCGCCGGCAGCGATGGGTCGCTAGATGTCTGCGCCAGGCTCTGCCTTATCGATGAAAATCAGACCATCATTTTCTCTACTTATGTTAAGCCAACGCTTCCCGTCACAAACTATTGGTTCGAATCCACGGGTATTCGTCCCGAATACTTGAGAGACGCACTGCCATTGAAACAAGTTCAGAAGAAAATTCAAGAGTTTCTCTGCAATGGAGAACAAATGTGGAAGATTCGACCTGGAGGTGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTAGAAGATGACCTCAAACGCTTGCAAATTGACTATCCTCCAATCATGATAAGGTACGATATTCAAAATGGCAACAAAGACCCCTATGAGGATTGTGTTGCGACGATGAAGTTGTACATGAGAATGAGATCCGAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAATAAAAATAATTTTGCAATTTGGAAGCAATATGAACTGGAGAGGATGAGCCCAGAACAGATGTTGGAAATCTCAAGATCTGATTACTATTGTTGGTGCTTGGACTCCAAGGTTAATTAA 675 44.59 MGGRFGNLGIICDKLTMDNGRTKRNEAVALACRMVGAGSDGSLDVCARLCLIDENQTIIFSTYVKPTLPVTNYWFESTGIRPEYLRDALPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMIRYDIQNGNKDPYEDCVATMKLYMRMRSEVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKVN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43403679 43410952 + Maker00039302 Lcy10g1930 645441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1930 224 SUPERFAMILY Ribonuclease H-like 40 171 IPR012337 -
Lcy10g1930 224 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 144 221 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Lcy10g1930 224 Pfam Exonuclease 54 147 IPR013520 -
Lcy10g1930 224 Gene3D - 22 144 IPR036397 GO:0003676(InterPro)
Lcy10g1930 224 SMART exoiiiendus 26 174 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1930 Lcy-Chr10:43403679 Lcy12g2216 Lcy-Chr12:43368544 4.81E-49 dispersed
Lcy10g1929 Lcy-Chr10:43394020 Lcy10g1930 Lcy-Chr10:43403679 4.42E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1930 - - - 0.0