Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1934 ATGATGTCGGACGGTTTGATCTTTAACCGGTCTCCAGGTCACGGCAACATGCTGTTTTTCGGGAGTGGTGATTCCATTCTTCGAGGACCGAGGTTCACGATGGGGATGGATGAAATTTCAAAGAAGCGACCCTTTTTCACCTCTCCGGATGACCTGTTCGACGACGACTACTACGATGACCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATAAGTTTTGAGGCGGAAAACAAACTGGAACCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCTTTTCGTTCTAGCTATGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCGTCCTTTCAAGCTAAGAAGTCCGAGCCAATTTTGGAAGATCAAATCCTTGTTCCTGTTGTGCAACATAGCATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGACGGTCCTCAACTCTTAGACAGTGGGGACTCGTACCTCCTGAGCAATGATTATGATGGCTGTGTTTTTCCAGTTCTCGGAGTGAACTCGGAGGAGGAGGACGGGAGTGACGACGGTCAGGGTTACTTCTCAGATGTTTATACAACAGCAGATCAGCAGACTCATGAGGGAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 48.75 MMSDGLIFNRSPGHGNMLFFGSGDSILRGPRFTMGMDEISKKRPFFTSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVFPVLGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43434046 43437044 + Maker00039833 Lcy10g1934 645445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1934 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Lcy10g1934 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Lcy10g1934 278 Coils Coil 140 167 - -
Lcy10g1934 278 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Lcy10g1934 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Lcy10g1934 278 Gene3D - 58 126 - -
Lcy10g1934 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 212 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lcy10g1934 278 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Lcy10g1934 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g1934 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy10g1934 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Lcy10g1934 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
Lcy10g1934 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1934 Lcy-Chr10:43434046 Lcy5g2284 Lcy-Chr5:45826600 3.94E-32 dispersed
Lcy10g0251 Lcy-Chr10:4055053 Lcy10g1934 Lcy-Chr10:43434046 1.77E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19036 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1934 K09338 - csv:101210106 482.256