Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1936 ATGGATCCGAGCTTGTTCTGGGGTCATCCTGAAAAGAGGGATTCATGGAGGACGATCTTCACTTTGGCTTACCAGAGCTTGGGAGTTGTTTATGGGGATTTGAGCACTTCTCCTCTGTATGTGTACAAAAGCACTTTTGCAGAAAACATTCAGCACTCTGAGACGAATGAGGAGGTTTATGGGGTTCTTTGCTTTGTGTTTTGGACTTTGACACTTATCCCTTTACTTAAATATGTGTTCATAGTTCTTAGAGCTGATGATAATGGCGAAGGGGGAACTTTTGCTCTGTATTCTCTGCTCTGCCGCCATGCCCGGCTGAGCTCCCTCCCTAATCATCAGCTAGCAGATGAGGAGCTTTCTGCTTATACAAGAGATAGACCTGAACCCAGTAGCAATTTTAGTTTTAGTTCTTGTCTGAAATCAACTTTGGAGAAATGTAAAGTTTTGCAAAGAATGTTGCTTGTTCTTGCCTTGATTGGGACTTGCATGGTTATTGGAGATGGAGTGCTCACACCAGCAATTTCAGTTTTTTCTGCTGTGTCTGGGCTTGAGTTATCCATGGCTAAGGAACATCACCAATATATCGAAGTCCCGCTCGCGTGTGGTATATTGGTATTCTTATTCGCATTGCAACATTACGGAACGCATCAGGTCGGATTCCTGTTTGCTCCAGTTGTAATTGTATGGCTTCTTTGCATCAGTGCCATTGGTTTGTACAATATCTTCTATTGGAATCCCTTGGTTTACAAAGCACTCTCACCATACTACATGTATAAGTTCTTGAAGAAAACCAGAAAGCAAGGTTGGATGGCGTTGGGCGGAATCCTCTTGTGTATAACAGGCTCAGAAGCTATGTTTGCTGATCTTGGACACTTCTCACAGTTTTCTATCAAGCTTGCTTTCACTTTCGCGGTTTATCCATCCTTGGTTCTTGCATATATGGGACAAGCTGCTTATCTTTCTAAGCATCACAATCTCGACAACGATTATCGGATCGGATTCTATGTTTCTGTTCCTGAGAAGGTAAGATGGCCAGTTCTTGCAATAGCAATACTTGCAGCAGTGGTGGGCAGTCAAGCGATCATCACCGGCACGTTTTCGATCATCAAACAATGTTCTGCTTTGGGTTGTTTTCCAAGGGTAAAGATCATTCATACGTCTTCGAAAATACACGGCCAGATTTACATTCCCCTGATCAACTGGATACTAATGATATTATGTTTGGCTGTTACCATTGGGTTTAGAGACACAAAACGCTTGGGCAATGCAGCAGGGTTGGCGGTTATAACCGTTATGCTCGTCTCGACTTGTCTGATGTCACTTGTCATCGTGTTATGTTGGCGTAAAAGTGTCTTGTTGGCCATAGCTTTCTTACTCTTCTTTGGCTCCATAGAAGCTCTCTACTTCTCTGCATCTCTTATCAAGTTCTTTGAAGGGGCTTGGGTTCCTATTGCTCTTGCACTAACCTTCCTTGTGGTTATGTATGTTTGGCATTATGGCACTCTAAAGAAATATGAGGCTGATGTTGAAAACAAAGTCCCTATTAATTGGCTCCTCAGTATAGGACCGAAAATCGGGATTGTTCGGGTTCGAGGAATCGGCCTTGTACATACCGAACTCGTTTCAGGGATCCCTGCCATTTTCTCTCATTTTGTCACCAACCTTCCAGCCTTTCACCAAATTCTAGTCTTCCTCTGCATCAAATCGGTCACAGTGCCTCATGTGAGACCTGAGGAAAGATTCTTGGTGGGAAGAGTTGGGCCAAAGGAGTATCGCCTCTACCGTTGCATCGCACGGTATGGCTACCGAGACGTGCACAAGGACGACTTAGAGTTCGAGAGAGATCTTGCCTGCAGCATTGCAGAATTCATTCGATCCGAGAGAACAGAATGCAACACTTTTAGACACCAAGACTTGGACGACAACGAAAGAATGACAGTGATTGGGACTTCATCAACACAACTAGACGGTATACGAATGTGTGAAAACGAAACATACTCTTCGCCAATAATTGGCACTTCGGAGATAAAGTCCGAGAAGTTAAGGAAGAGAGTAAGGTTCGTGCTCCCGGAGAGTCCGAAAATGGATATCGATACGAGGGGAGAGTTGCAAGAATTGATGGAAGCAAGGGAGGCAGGAATAGCATTCATAATGGGACATTCATATGTGAAGGCAAAGAAAGGATCAGGTTGGATGAAGAAGCTTGTGATTAATTATGGCTATGATTTCTTGAGGAAAAATTCAAGAGGGCCATCTTATGCTTTGAGCATTCCTTATGCTTCTACTCTTGAGGTTGGTATGGTTTATTATGTTTAA 2316 43.48 MDPSLFWGHPEKRDSWRTIFTLAYQSLGVVYGDLSTSPLYVYKSTFAENIQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSAYTRDRPEPSSNFSFSSCLKSTLEKCKVLQRMLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMAKEHHQYIEVPLACGILVFLFALQHYGTHQVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMYKFLKKTRKQGWMALGGILLCITGSEAMFADLGHFSQFSIKLAFTFAVYPSLVLAYMGQAAYLSKHHNLDNDYRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVIVLCWRKSVLLAIAFLLFFGSIEALYFSASLIKFFEGAWVPIALALTFLVVMYVWHYGTLKKYEADVENKVPINWLLSIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQILVFLCIKSVTVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDVHKDDLEFERDLACSIAEFIRSERTECNTFRHQDLDDNERMTVIGTSSTQLDGIRMCENETYSSPIIGTSEIKSEKLRKRVRFVLPESPKMDIDTRGELQELMEAREAGIAFIMGHSYVKAKKGSGWMKKLVINYGYDFLRKNSRGPSYALSIPYASTLEVGMVYYV 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43445714 43450094 + Maker00039871 Lcy10g1936 645447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1936 771 Pfam K+ potassium transporter integral membrane domain 22 519 IPR053951 -
Lcy10g1936 771 NCBIfam potassium uptake protein 22 771 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy10g1936 771 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 15 771 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy10g1936 771 Pfam K+ potassium transporter C-terminal domain 532 769 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1936 Lcy-Chr10:43445714 Lcy10g2390 Lcy-Chr10:47494113 2.85E-209 dispersed
Lcy11g0078 Lcy-Chr11:795800 Lcy10g1936 Lcy-Chr10:43445714 5.04E-280 transposed
Lcy7g1064 Lcy-Chr7:11363119 Lcy10g1936 Lcy-Chr10:43445714 0 transposed
Lcy10g0268 Lcy-Chr10:4419899 Lcy10g1936 Lcy-Chr10:43445714 0 wgd
Lcy10g1936 Lcy-Chr10:43445714 Lcy7g0195 Lcy-Chr7:1702649 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1936 K03549 - csv:101218141 1475.3