Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1947 ATGGCTCCGAGCTCTGTTGTGGTCACAATTGAGAAGCATAACAGTTTCCCTTTAGTGGAAATCAATGGCTCTGATTCTCTGTTGCTTCCTGAGAAGCAGAAGGCCGCCAGTCCCAAGCAGCTCACTTGGGTTCTTCTTCTCAAAGCCCACAGAGCTCTGTTTTTCTTCTCGTGGTTGGCCATGACTGCCAAGACTGTCTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAGTTGTATAGATTCATTAAAGCTTTTCTCGCTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCATTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTCGAGGTTCATGGGCTTGTCCAATGGTTTTATGTCTCGTGGCTTGCGTTTCGAGTTGATTACGTTGCTCCACTGGTGCTAATGCTTTCTAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGCCTTGTTCTGTGCGTTGGCTGCTTTTGGATCAAATACAAGAGAATCAAGCCCACGATTCAAGATGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCGATGGTTCTTGTTCAAATTCCAATGTGCAATGAGAGAGAGGTTTATGCACAATCCATTGCTGCTGCTTGTCAGCTTGATTGGCCAAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAGAAGGGTGTTAATATTGTTTACAGACATAGATTGATCCGAACTGGGTATAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTAACGATCCCCCATTTCAAGGGAAATCCTCAACTGGGACTTGTCCAAGCTCGGTGGGCGTTTGTTAACAAGGACGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTTCACTTTGAAGTGGAGCAGCAAGTTAATGGTGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGGAAGCGCTTGAGGAATCCGGTGGCTGGCTCGAGAGGACGACCGTGGAAGATATGGACATCGCAGTTCGAGCTCACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTGTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCTATGCAGCTCTTCAGATTATGCCTGCCTTCGATCATTACTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTCCTGTTCTTTCTCCTGAGAAAACTCATCCTTCCCTTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTCTGGGTGATCTGCTACATCCCAGTCTTCATGTCATTGCTAAACATTCTTCCATCCCCCAAATCCTTCCCCTTCTTGATCCCATACCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGATCGTGACAAAGAAGACAGGACGATCGTCGGAATCCGACTTCTTAGCATTCGCCGAGCGAGAGTCGAAAACGACGAACGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGGCTGGAGTTGTTGAGCAAATTGAACCAACAAGAGAAGCAGCAAAAGGGTTCAAACTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTAGCCCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTGTTGTCAGCACATGGAGTTCACTTCTATTTCTTGCTCTTCCAAGGTTTGTCATTCCTGGTTGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2010 43.93 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTAKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLAISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYVSWLAFRVDYVAPLVLMLSKFCIVLFLIQSLDRLVLCVGCFWIKYKRIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACQLDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPQLGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTEALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKTGRSSESDFLAFAERESKTTNEEKILRRHSESGLELLSKLNQQEKQQKGSNSKKKRNKVYRKELALAFLLLTASARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43518590 43521526 - Maker00039367 Lcy10g1947 645458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1947 669 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Lcy10g1947 669 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Lcy10g1947 669 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 117 668 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lcy10g1947 669 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Lcy10g1947 669 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1947 K20887 - - csv:101208151 1238.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g1762 Lcy-Chr9:42822519 0 dispersed
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g2003 Lcy-Chr9:44915253 7.67E-306 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1070 . 272 432 REM Transcription Factor Family AT1G49480 72.0 1.2e-56 217.2
Lcy9g1762 . 1 696 REM Transcription Factor Family AT2G24630 78.5 0.0e+00 1103.2
Lcy10g1947 . 6 670 REM Transcription Factor Family AT2G24630 69.3 4.8e-266 914.4
Lcy9g2003 . 1 707 REM Transcription Factor Family AT2G24630 64.3 3.8e-263 904.8
Lcy13g2156 . 5 699 REM Transcription Factor Family AT2G24630 65.8 8.8e-260 893.6
Lcy3g1330 . 108 347 REM Transcription Factor Family AT2G24630 80.8 1.6e-115 414.5
Lcy10g1696 . 13 334 REM Transcription Factor Family AT2G24630 51.2 2.5e-89 327.4
Lcy9g1762 . 1 696 REM Transcription Factor Family AT2G24630 78.5 0.0e+00 1103.2
Lcy10g1947 . 6 670 REM Transcription Factor Family AT2G24630 69.3 4.8e-266 914.4
Lcy9g2003 . 1 707 REM Transcription Factor Family AT2G24630 64.3 3.8e-263 904.8
Lcy13g2156 . 5 699 REM Transcription Factor Family AT2G24630 65.8 8.8e-260 893.6
Lcy3g1330 . 108 347 REM Transcription Factor Family AT2G24630 80.8 1.6e-115 414.5
Lcy10g1696 . 13 334 REM Transcription Factor Family AT2G24630 51.2 2.5e-89 327.4
Lcy9g1762 . 1 696 REM Transcription Factor Family AT2G24630 78.5 0.0e+00 1103.2
Lcy10g1947 . 6 670 REM Transcription Factor Family AT2G24630 69.3 4.8e-266 914.4
Lcy9g2003 . 1 707 REM Transcription Factor Family AT2G24630 64.3 3.8e-263 904.8
Lcy13g2156 . 5 699 REM Transcription Factor Family AT2G24630 65.8 8.8e-260 893.6
Lcy3g1330 . 108 347 REM Transcription Factor Family AT2G24630 80.8 1.6e-115 414.5
Lcy10g1696 . 13 334 REM Transcription Factor Family AT2G24630 51.2 2.5e-89 327.4
Lcy8g1070 . 272 432 REM Transcription Factor Family AT1G49480 72.0 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33