Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1947 ATGGCTCCGAGCTCTGTTGTGGTCACAATTGAGAAGCATAACAGTTTCCCTTTAGTGGAAATCAATGGCTCTGATTCTCTGTTGCTTCCTGAGAAGCAGAAGGCCGCCAGTCCCAAGCAGCTCACTTGGGTTCTTCTTCTCAAAGCCCACAGAGCTCTGTTTTTCTTCTCGTGGTTGGCCATGACTGCCAAGACTGTCTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAGTTGTATAGATTCATTAAAGCTTTTCTCGCTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCATTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTCGAGGTTCATGGGCTTGTCCAATGGTTTTATGTCTCGTGGCTTGCGTTTCGAGTTGATTACGTTGCTCCACTGGTGCTAATGCTTTCTAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGCCTTGTTCTGTGCGTTGGCTGCTTTTGGATCAAATACAAGAGAATCAAGCCCACGATTCAAGATGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCGATGGTTCTTGTTCAAATTCCAATGTGCAATGAGAGAGAGGTTTATGCACAATCCATTGCTGCTGCTTGTCAGCTTGATTGGCCAAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAGAAGGGTGTTAATATTGTTTACAGACATAGATTGATCCGAACTGGGTATAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTAACGATCCCCCATTTCAAGGGAAATCCTCAACTGGGACTTGTCCAAGCTCGGTGGGCGTTTGTTAACAAGGACGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTTCACTTTGAAGTGGAGCAGCAAGTTAATGGTGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGGAAGCGCTTGAGGAATCCGGTGGCTGGCTCGAGAGGACGACCGTGGAAGATATGGACATCGCAGTTCGAGCTCACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTGTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCTATGCAGCTCTTCAGATTATGCCTGCCTTCGATCATTACTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTCCTGTTCTTTCTCCTGAGAAAACTCATCCTTCCCTTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTCTGGGTGATCTGCTACATCCCAGTCTTCATGTCATTGCTAAACATTCTTCCATCCCCCAAATCCTTCCCCTTCTTGATCCCATACCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGATCGTGACAAAGAAGACAGGACGATCGTCGGAATCCGACTTCTTAGCATTCGCCGAGCGAGAGTCGAAAACGACGAACGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGGCTGGAGTTGTTGAGCAAATTGAACCAACAAGAGAAGCAGCAAAAGGGTTCAAACTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTAGCCCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTGTTGTCAGCACATGGAGTTCACTTCTATTTCTTGCTCTTCCAAGGTTTGTCATTCCTGGTTGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2010 43.93 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTAKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLAISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYVSWLAFRVDYVAPLVLMLSKFCIVLFLIQSLDRLVLCVGCFWIKYKRIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACQLDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPQLGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTEALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKTGRSSESDFLAFAERESKTTNEEKILRRHSESGLELLSKLNQQEKQQKGSNSKKKRNKVYRKELALAFLLLTASARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43518590 43521526 - Maker00039367 Lcy10g1947 645458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1947 669 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Lcy10g1947 669 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Lcy10g1947 669 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 117 668 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lcy10g1947 669 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Lcy10g1947 669 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g1762 Lcy-Chr9:42822519 0 dispersed
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g2003 Lcy-Chr9:44915253 7.67E-306 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1947 K20887 - csv:101208151 1238.02