Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1952 ATGGTCGGCGGCCCTTACTACACCGTCTTCCTTGGCCGCAAGGATGCGAAAGTTTCCAGTGCCTCCGCCATTGAAGGCACGCTCCCCAGACCCTCCATGTCCGTCTCTGAGATTATCGGAATCTTCGCCGCTAGAGGGTTTTCCGTTCAGGAAATGGTGGCGCTAAGCGGCGCACATTCAATTGGCTTCTCGCATTGCAAGGAGTTCACCTCTGGGATATTCAATTACAGCAGATCCCCGCCCTACGACAGCCATTACAACCCTAGATTCGCATTAGGTTTACAGAGAGCCTGCGCCGATTACCAGAAGAATCCGACTCTGTCCGTTTTCAACGACATAATGACGCCGAACAAGTTCGACAACATGTATTTCAAGAATCTGCAGAGGGGGTTAGGGCTTCTGAAATCCGATGGCGGATTTTACAGCGATTCAAGAACACGACCGTGGGTGGAGAAATACGCAGCAGATGAGAGCGCCTTCTTCGAGGCGTTTTCTCGAGCAATGGTGAAGCTCGGTGGCTATGGCGTCAAAGTAGGGAACGAAGGAGAAATTAGACGCAGGTGCGATGCCTTTAATTGA 579 51.64 MVGGPYYTVFLGRKDAKVSSASAIEGTLPRPSMSVSEIIGIFAARGFSVQEMVALSGAHSIGFSHCKEFTSGIFNYSRSPPYDSHYNPRFALGLQRACADYQKNPTLSVFNDIMTPNKFDNMYFKNLQRGLGLLKSDGGFYSDSRTRPWVEKYAADESAFFEAFSRAMVKLGGYGVKVGNEGEIRRRCDAFN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43564455 43565033 + Maker00039963 Lcy10g1952 645463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1952 192 ProSitePatterns Peroxidases proximal heme-ligand signature. 51 61 IPR019793 -
Lcy10g1952 192 PRINTS Plant peroxidase signature 110 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PRINTS Plant peroxidase signature 3 18 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PRINTS Plant peroxidase signature 166 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PRINTS Plant peroxidase signature 126 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PRINTS Plant peroxidase signature 50 62 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 FunFam Peroxidase 29 171 - -
Lcy10g1952 192 Pfam Peroxidase 2 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 SUPERFAMILY Heme-dependent peroxidases 2 192 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 Gene3D - 2 192 - -
Lcy10g1952 192 PRINTS Haem peroxidase superfamily signature 112 127 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PRINTS Haem peroxidase superfamily signature 51 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PRINTS Haem peroxidase superfamily signature 3 15 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 PANTHER - 1 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g1952 192 Gene3D Peroxidase, domain 2 29 171 - -
Lcy10g1952 192 ProSiteProfiles Plant heme peroxidase family profile. 1 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0302 Lcy-Chr10:5387420 Lcy10g1952 Lcy-Chr10:43564455 4.75E-91 dispersed
Lcy10g1952 Lcy-Chr10:43564455 Lcy7g1962 Lcy-Chr7:46171679 1.14E-138 dispersed
Lcy9g1913 Lcy-Chr9:44127211 Lcy10g1952 Lcy-Chr10:43564455 1.44E-37 transposed
Lcy10g1952 Lcy-Chr10:43564455 Lcy5g2246 Lcy-Chr5:45418386 1.61E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1952 K00430 - csv:105435603 345.125