Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1953 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTCCATAGACACATTAAACATAACTGGGTTTTGGAGAAGGATTCTCCAGCGGTTGCAGTTTCTGAGATTACCAGTAGTCCTAGACGAAAATGGCGGATCTTCAGTCGGTCTTCTTCTTCCCCATTTCCGTCGAAACCCCAGTTTAAGGAAATACCCAAGGAATTGCTCTGCCCCATTTCTGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGTCACACTTTCGAAGCTGCCTGTGTTCAAGTTTGCAAAGAATTAGGGTTGAAGCCGACTTTATTAGATGGTTCGAAGCCGGATTTCTCCTCTGTAATCCCGAATCTGGCTTTGAAATCCACCATTTTCAATTGGTGTAAGAACTCCTCTTCTGAACCCCCAAAACCCCTCGATTTCTCCTCTGCCGAAAAGCTCGTTCGTAAATTCATGGCGGTTCACCGCAAAAGCGATGAGGAATTGATTCAGGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCTACCGAGGTCACTCGTCGGAAATCTCATTTCCACTCGAGCTCCGATGAATCTGTCGCTGCCGTTCCGACTCTGCCTCTTCCTCTCGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGAAATCGAGATCTCTACTCTGAACTCGCCTGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGATTACGCTGAGAAAAATTACGAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTTCTATGATTCTCACTGTTCTGCGATCTCTCATCGTTTCAAGGTACAGCGGCGTTCAGGTGAATTCAGTTGCAGCGCTGGTGAATCTGTCTTTAGATAATATGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGGTCGATGTTTTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCCGCCGGCGCCATTTTCAGCTTGGCCCTCGCCGACGACAACAAAACGGCGATCGGCGTATTGGGTGCTCTGCCGCCATTGATTCGGCTACTGGTATCCGACTCGGAGCAGACTCGGCACGACTCGGCTCTTGCTCTGTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTAAAATCCGGCCACATGGCCGGCCGGATTCTGCTGATACTGTGCAATTTAGCAGCGTGTTTCGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCTGAGTCAACTCGGGAGAGTTGCGTGGCGGTTCTGTTTGGATTGAGTTACGGTGGTTTGAGGTTCAAGGGTCTAGCCAAAACCGCCGGGGCAATGGAGGTTTTCATGGCGGTGGAGAAAAACGGAAGTGAGAGATCAAAAGAGAAGGTTAAGAGGATCATGGAGTTGATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAATTGCTTGACTCGGGTTGTTTCGGCAGCCGAACTCGGTGTCGAATCGGTGCCGGAATGGACAGGTCCACCTCGAACTCGTCCGAGTTCTGA 1650 50.67 MEFQEGLMKFMVHRHIKHNWVLEKDSPAVAVSEITSSPRRKWRIFSRSSSSPFPSKPQFKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKELGLKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPKPLDFSSAEKLVRKFMAVHRKSDEELIQGVAENPVVRFNHAATEVTRRKSHFHSSSDESVAAVPTLPLPLATRPSCCSSSSSSEIEISTLNSPEEEEIIAKLKSPQVIEIEEAVITLRKITRTREDTRVHLCSSMILTVLRSLIVSRYSGVQVNSVAALVNLSLDNMNKVKIVRSGILPNLVDVLKGGSPEVQEHAAGAIFSLALADDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMELMKARDEEAEDVNWEELLDSGCFGSRTRCRIGAGMDRSTSNSSEF 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43565586 43567235 - Maker00039477 Lcy10g1953 645464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1953 549 Pfam Armadillo/beta-catenin-like repeat 303 341 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 Pfam Armadillo/beta-catenin-like repeat 344 382 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Lcy10g1953 549 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 354 396 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy10g1953 549 SUPERFAMILY ARM repeat 234 492 IPR016024 -
Lcy10g1953 549 SUPERFAMILY RING/U-box 57 136 - -
Lcy10g1953 549 SMART arm_5 343 383 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 SMART arm_5 423 466 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 SMART arm_5 302 342 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 Gene3D - 228 505 IPR011989 -
Lcy10g1953 549 FunFam RING-type E3 ubiquitin transferase 230 506 - -
Lcy10g1953 549 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 313 350 IPR000225 GO:0005515(InterPro)
Lcy10g1953 549 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy10g1953 549 PANTHER U BOX DOMAIN-CONTAINING 46 507 - -
Lcy10g1953 549 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1953 Lcy-Chr10:43565586 Lcy12g1177 Lcy-Chr12:23394262 8.12E-41 dispersed
Lcy10g1953 Lcy-Chr10:43565586 Lcy5g2248 Lcy-Chr5:45425010 5.53E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1953 - - - 0.0