Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1970 ATGAAGATCTCCAACTTGTTCGTCACATGGGTTTCTCTGAATCATCATCTTCTTCTCCTTCTACTTTTTGCTTCTTCATCTTTTGCTTCAGTTCCAGAAGATGACATAAGGTGCCTTCGAGGGGTTAAGGATTCGCTCGAGGATCCTCTCGGAAGGCTCAGTTCCTGGGATTTCAAGAACACATCCGTCGGCAATCTCTGCAACAAATTCGTCGGCCTCTCCTGCTGGAACGACCGGGAGAATCGCATTCTGAGCCTCGAGCTCAAGGATATGAAGCTCGCCGGGTCGATTTCCGAGGAGTTGCAGTACTGCGTGAGCCTGCAGAGACTGGATCTGTCCGGCAATACCTTTTCCGGCGAGATCCCGCCGCATATTTGTAAGTGGCTTCCCTATTTGGTTAGCTTGGATTTGTCGAACAACCGTTTTACCGGCCCTATTCCGGCTGATCTTGCTGGATGTTCTTATCTGAATTCGTTGATTTTGTCTGATAATGGCCTTACCGGGACTATACCAGTTGAGCTTACCAGTTTGGGTAGGCTTAACAAATTTTCTGTTGCGAACAATCAGCTCACTGGTACGATTCCCTCATTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAACAGTGACTTGTGTGGAGAGCCTGTTGGATCGAGTTGTGGTGGGTTGAGCAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCGGCTTCTTTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCACTCTAGAATGAACATGAAGAAGAGAAGGGGGTATGGGGATGGGCTTAGTGGGGATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGGCTGCGACTAACAATTTCAATTCTGAAAATATAATAGTTTCATCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCTGATGGCTCTGTGCTCGCTATAAAGCGACTCAATACCTGCAAGCTCGGCGAGAAGCTCTTTCGTATGGAGATGAACCGGTTAGGATTGATCAGGCACCCGAATTTGACACCCCTTTTAGGGTTCTGTGTTGTGGAGGAGGAAAAGCTTTTGGTTTATAAGTACATGTCTAATGGGACTTTATCCTCTTTGTTACATGGAAATGATGAGATATTGGATTGGCCAACTAGGTTTAGGATCGGTTTTGGTGCCGCTAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCAAGTGTAATTCTTGTGGATGATGACTATGATGCTAGGATCATGGATTTTGGATTGGCGAGGTTAATGGCTTCGGATTCTCACGACAGCAGCTTCGTGAATGGAGATTTAGGGGAACTTGGTTACGTTGCTCCCGAATATCCGAGCACCATGGTTGCTTCTCTGAAAGGAGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGATCACTGGCCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTAGTTCAGGTCGAATTAAGGATGTTATTGATAAAGATCTTTGTGGAAAAGGCAACGACGAGGAAATCTTACAATTTCTGAAGATTACAATGAACTGCACTGTTTCTCGGCCCAAGGACCGGTGGTCTATGTATCAGGTTTATCAGTCAATGAAGGCAATGGCTAAAGACTACAGTTTCTCTGAACCAGATGATGAGTTCCCACTTTTACTCGGCAAGGGAGACAACGAGCCCGTGTAG 1824 45.18 MKISNLFVTWVSLNHHLLLLLLFASSSFASVPEDDIRCLRGVKDSLEDPLGRLSSWDFKNTSVGNLCNKFVGLSCWNDRENRILSLELKDMKLAGSISEELQYCVSLQRLDLSGNTFSGEIPPHICKWLPYLVSLDLSNNRFTGPIPADLAGCSYLNSLILSDNGLTGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGEPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRRGYGDGLSGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNDEILDWPTRFRIGFGAARGLAWLHHGCQPPFMHQNICSSVILVDDDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSSSGRIKDVIDKDLCGKGNDEEILQFLKITMNCTVSRPKDRWSMYQVYQSMKAMAKDYSFSEPDDEFPLLLGKGDNEPV 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43780799 43782622 + Maker00039243 Lcy10g1970 645481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1970 607 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
Lcy10g1970 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 32 222 - -
Lcy10g1970 607 SUPERFAMILY L domain-like 32 209 - -
Lcy10g1970 607 Gene3D Phosphorylase Kinase; domain 1 269 382 - -
Lcy10g1970 607 Pfam Leucine rich repeat 106 166 IPR001611 GO:0005515(InterPro)
Lcy10g1970 607 Pfam Protein tyrosine and serine/threonine kinase 332 515 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1970 607 Pfam Leucine rich repeat N-terminal domain 33 76 IPR013210 -
Lcy10g1970 607 ProSiteProfiles Protein kinase domain profile. 308 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1970 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 383 601 - -
Lcy10g1970 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 270 382 - -
Lcy10g1970 607 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 580 - -
Lcy10g1970 607 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Lcy10g1970 607 Gene3D Ribonuclease Inhibitor 33 223 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1970 Lcy-Chr10:43780799 Lcy1g1098 Lcy-Chr1:10018907 6.52E-63 dispersed
Lcy3g0747 Lcy-Chr3:26900497 Lcy10g1970 Lcy-Chr10:43780799 2.52E-31 dispersed
Lcy3g1275 Lcy-Chr3:38629301 Lcy10g1970 Lcy-Chr10:43780799 5.93E-129 transposed
Lcy10g1970 Lcy-Chr10:43780799 Lcy8g1625 Lcy-Chr8:42832368 5.65E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65413 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1970 - - - 0.0