Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1984 ATGGGGGACAAGGATGATGTTTTGGAGGCTGTTGTGAAGGAAGCTGTTGATTTGGAGAACGTGCCTCTTGAAGAGGTTTTTCAGACTTTGAGGTGTAATACTAATGGTTTGACAACAGAGGCGGCTCGTGAGAGGTTGGCCATTTTTGGCTATAACAAGCTTGAAGAAAAAAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCTAATGGAGGAGGAAAACCTCCAGATTGGCAAGATTTTGTTGGGATCATAACCTTGTTACTTATCAATTCAACTATTAGTTTTATAGAGGAGAACAATGCTGGAAATGCTGCAGCTGCTCTCATGGCTCGTCTTGCACCGAAAGCTAAGTCTGCTCTCACGGGTGAATCACTTCCTGTGACTAAAGGCCCCGGCGACAGTGTCTATTCAGGGTCGACTTGCAAACAGGGAGAAATTGAAGCAGTTGTTATTGCTACTGGTGTTCATACCTTCTTTGGCAAAGCTGCTCATCTTGTGGACTCCACAAACCAAGTGGGTCACTTCCAAAAGGCACGAGCAGGAATTCAAGAGGTTCACTTCCTTCCATTCAACCCAACTGACAAGCGGACTGCCCTGACATACATTGATGGTGATGGTAAAATGCATCGGGTCAGCAAAGGTGCTCCAGAACAGATTTTGAATCTTGCACACAACAAATCAGAGATAGAAAGAAGAGTTCATGCTGTAATCGATAAGTTCGCAGAGCGAGGATTGCGATCTCTTGCAGTGGCATACCAAGAAGTTCCAGAAGGAAGGAAGGAGAGTCATGGAGGGCCATGGCAATTCATCGGCCTATTGCCACTGTTTGACCCACCTAGACATGATAGTGCAGAGACAATTAGGAGGGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTGGCTATAGGAAAGGAGACAGGACGTCGGCTCGGGATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGACAGAACAAAGATGAATCAATATCTGGACTGCCTGTTGATGACTTAATTGAGAAGGCTGATGGATTTGCTGGTGTATTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGAAAACATATATGTGGAATGACTGGAGATGGCGTTAATGATGCTCCTGCTCTAAAAAAGGCTGATATTGGCATAGCAGTTGCTGATGCAACCGATGCAGCTCGTAGCGCTTCTGACATTGTTCTTACAGAGCCTGGTCTTAGTGTTATTATAAGCGCTGTTCTAACCAGCAGGGCCATCTTCCAGAGGATGAAAAATTACACGATTTATGCGGTTTCAATTACCATTCGTATTGTGCTTGGATTCATGTTGCTGGCCCTTATATATCAATTTGACTTCCCACCTTTTATGGTTTTGATCATTGCTATCCTTAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCTCTGCCAGATAGCTGGAAACTGGCTGAGATTTTTGGCACTGGAATTATACTTGGAGGTTATTTGGCTATGATGACCGTTATTTTCTTCTGGGCAGCTTACAAAACTGACTTCTTTCCTCGTACATTTGGGGTTTCTAGCCTTCAGAAGAAGGATGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCCCTCATCTTTGTTACACGATCTCGGAGTTGGTCGTTTGTGGAGCGTCCTGGCCTGTTATTGGTTGCAGCTTTCATTATTGCTCAGCTGGTGAGTGCACTGTTAGATTCTAGCCACATCTTGACGTCTGATTTTGATATCCTTGATTCATTAATCATCGTACATGAACAGATTGCTACCGTCATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGGATTGGCTGGGGCTGGGCTGGTGTGGTTTGGCTATACAACCTCATCTTTTATTTCCCACTTGATCTAATTAAGTTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTCACAAGGAAGAAGGATTTTGGGAAGGAAGAGCGTGAGCTCAAATGGGCACATGCACAAAGGACACTTCATGGGCTGCAGCCACCTGAGGCTAAGATGTTTTCTGAGCGCACAACTTATACAGAACTCAATCAAATGGCTGAAGAAGCAAAACGACGAGCTGAAATTGCAAGGCTGAGAGAGCTGCACACACTGAAAGGTCATGTTGAATCAGTGGTGAGGCTGAAGGGTCTTGATATCAACACGATTCAGCAGTCATACACAGTATAG 2370 43.88 MGDKDDVLEAVVKEAVDLENVPLEEVFQTLRCNTNGLTTEAARERLAIFGYNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKARAGIQEVHFLPFNPTDKRTALTYIDGDGKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESHGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISGLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFIIAQLVSALLDSSHILTSDFDILDSLIIVHEQIATVIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDLIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFSERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43942630 43948739 + Maker00039496 Lcy10g1984 645495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1984 789 SUPERFAMILY Calcium ATPase, transduction domain A 137 186 IPR008250 -
Lcy10g1984 789 Gene3D - 738 789 - -
Lcy10g1984 789 Pfam haloacid dehalogenase-like hydrolase 250 410 - -
Lcy10g1984 789 PRINTS H+-transporting ATPase (proton pump) signature 396 412 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1984 789 PRINTS H+-transporting ATPase (proton pump) signature 368 384 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1984 789 PRINTS H+-transporting ATPase (proton pump) signature 427 452 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1984 789 PRINTS H+-transporting ATPase (proton pump) signature 253 271 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1984 789 PRINTS H+-transporting ATPase (proton pump) signature 572 593 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1984 789 FunFam Plasma membrane ATPase 290 444 - -
Lcy10g1984 789 Pfam E1-E2 ATPase 137 190 - -
Lcy10g1984 789 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 685 IPR023298 -
Lcy10g1984 789 PANTHER CALCIUM-TRANSPORTING ATPASE 137 198 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy10g1984 789 FunFam ATPase 4 plasma membrane-type 381 622 - -
Lcy10g1984 789 FunFam Membrane H(+)-ATPase1 236 296 - -
Lcy10g1984 789 Gene3D - 162 296 IPR023299 GO:0000166(InterPro)
Lcy10g1984 789 Gene3D - 68 143 - -
Lcy10g1984 789 Gene3D - 398 685 - -
Lcy10g1984 789 Coils Coil 740 760 - -
Lcy10g1984 789 SUPERFAMILY HAD-like 288 442 IPR036412 -
Lcy10g1984 789 NCBIfam HAD-IC family P-type ATPase 371 479 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy10g1984 789 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Lcy10g1984 789 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1984 Lcy-Chr10:43942630 Lcy12g0539 Lcy-Chr12:6595148 0 dispersed
Lcy10g1984 Lcy-Chr10:43942630 Lcy2g0599 Lcy-Chr2:5111766 0 wgd
Lcy10g1984 Lcy-Chr10:43942630 Lcy5g2280 Lcy-Chr5:45789954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1984 K01535 - csv:101211115 1056.97