Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1988 ATGGGTTTGGCTCCTAATGACTCGAAGGTCGAGACATGGATTGAAGGCAAGGCAAGAATGGCCAGCGAGAAGAAGAAGAAGAAGGAAAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATTGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACCCATTGCGGTAAACTTCTTGTTCTTTTGGTTTTTGTTGATAGTAAATCTAAACTCGACGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGCTCGTCCACGCCCAAGCTTAGTGCTGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCAGACCTGAAAGCCTTCTTGGCGAGGGGGGTTTTGGTTGCGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACGGTTGCAGTGAAGACTCTTAATCATGACGGTCTACAAGGTCACAAAGAGTGGATGGCTGAAGTTAACTTCCTTGGCGACCTCAACCATTCTAATCTTGTAAGGTTGATTGGTTGCTGCATTGAAGACGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAAAACCACCTCTTCAGAAAAGGGCCCTTGCCACTTCCTTGGTCAATAAGAATGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTGTTAGATGCGGATTACAACGCTAAACTCTCAGATTTTGGACTTGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACATATGGCTATGCAGCTCCAGAATATGTAATGACTGGGCATTTGACATCAAAAAGTGATGTCTACAGTTTTGGAGTTGTCTTGCTCGAAATGCTAACTGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTTGAGTGGGCTAGACCCCTACTTGGAGACAAGAGGAAGTTCCACCGGCTGATAGATCCCCGCCTCGAATGTCACTTCTCAATCAAAGGTGCACAAAAAGCTGCAGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTGTTATGAGTGAAGTTGTTGAAACTCTAAAACCCTTGCCAAACCTCAAGGACATGGCGAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCCAGGTCCAACCCCAATGCTAAAAGTGTCGTCCGCACGCAGTCAATGTTTGTGGCAAGGAACGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCATATAACTATCCTCATCAGTCACCAAAACCTGACAGGAGATAA 1503 44.38 MGLAPNDSKVETWIEGKARMASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCGKLLVLLVFVDSKSKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFHRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPVMSEVVETLKPLPNLKDMASSSYYFQTMQADRARSNPNAKSVVRTQSMFVARNGQHIRSLSSPNGPHASPYNYPHQSPKPDRR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43966899 43971856 + Maker00039870 Lcy10g1988 645499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1988 500 MobiDBLite consensus disorder prediction 471 500 - -
Lcy10g1988 500 Pfam Protein tyrosine and serine/threonine kinase 149 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g1988 500 SUPERFAMILY Protein kinase-like (PK-like) 122 426 IPR011009 -
Lcy10g1988 500 Gene3D Transferase(Phosphotransferase) domain 1 231 449 - -
Lcy10g1988 500 MobiDBLite consensus disorder prediction 471 488 - -
Lcy10g1988 500 PANTHER OS01G0588500 PROTEIN-RELATED 116 430 IPR050823 -
Lcy10g1988 500 ProSitePatterns Protein kinases ATP-binding region signature. 151 183 IPR017441 GO:0005524(InterPro)
Lcy10g1988 500 ProSiteProfiles Protein kinase domain profile. 145 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g1988 500 FunFam Probable serine/threonine-protein kinase PBL8 231 447 - -
Lcy10g1988 500 FunFam Serine/threonine-protein kinase BIK1 112 230 - -
Lcy10g1988 500 CDD STKc_IRAK 151 429 - -
Lcy10g1988 500 Gene3D Phosphorylase Kinase; domain 1 119 230 - -
Lcy10g1988 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1988 Lcy-Chr10:43966899 Lcy4g2085 Lcy-Chr4:47399149 1.58E-169 dispersed
Lcy5g0016 Lcy-Chr5:400059 Lcy10g1988 Lcy-Chr10:43966899 9.87E-63 dispersed
Lcy5g0038 Lcy-Chr5:543518 Lcy10g1988 Lcy-Chr10:43966899 4.29E-59 dispersed
Lcy10g1988 Lcy-Chr10:43966899 Lcy7g0253 Lcy-Chr7:2197519 1.59E-252 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65414 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1988 - - - 0.0