Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g1995 ATGGCTTCCCCTCATCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCATGAATACGTCCCCTCGACTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTCCACGATGGGGTCGTCCCGCTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGATTGTCTGACGACGGATCGGCTTTGGGAGAGAAGAAGAAGAGGTTAAATTTAGAGCAAGTTAAGGCTTTGGAGAAGAGCTTTGAGCTGGGAAACAAGCTGGAGCCCGAGAGGAAAATGCAGCTGGCCAAAGCTCTGGGGCTGCAGCCGAGACAGATTGCTATTTGGTTTCAGAACAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAGAGATTACGAGGTGTTGAAGAAACAGTTTGAAGCTCTCAAGGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCGGTGGCAGGCGGCGGCGCCACCGTGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATCAACCTCGACATCTCAAGAACACAAGCACCGATAACAACCAACGGCGGCGGCGGTGGAAGAGCATGTTCCCAACCTGGAATCAAGGAGCTGTTCCCGTCGGCAGCCGCGGCGGCCGCGTTCCGATCGGCCGCCATAACGCAGCTGCTGCAACACGGCTCTTCAAGATCAAGCGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCGGTCAAATGTTCAATGGAATGGAAGAACAACAACAAACTGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 921 51.9 MASPHHSHSFMFQSRPADHHEYVPSTSFNAIPSCPPHLYFHDGVVPLMMKRSMSFSGVENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAVAGGGATVNLKKENERCWSSDNSCDINLDISRTQAPITTNGGGGGRACSQPGIKELFPSAAAAAAFRSAAITQLLQHGSSRSSVDHPQVIQEESFGQMFNGMEEQQQTAAAGFWPWSSDQNSHFH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44035224 44037848 - Maker00039621 Lcy10g1995 645506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g1995 306 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Lcy10g1995 306 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677(InterPro)
Lcy10g1995 306 MobiDBLite consensus disorder prediction 285 306 - -
Lcy10g1995 306 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Lcy10g1995 306 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Lcy10g1995 306 Gene3D - 74 144 - -
Lcy10g1995 306 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Lcy10g1995 306 Coils Coil 128 169 - -
Lcy10g1995 306 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy10g1995 306 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Lcy10g1995 306 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
Lcy10g1995 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 220 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lcy10g1995 306 SUPERFAMILY Homeodomain-like 75 138 IPR009057 -
Lcy10g1995 306 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1995 Lcy-Chr10:44035224 Lcy1g0814 Lcy-Chr1:6916541 2.15E-29 dispersed
Lcy10g1995 Lcy-Chr10:44035224 Lcy5g2284 Lcy-Chr5:45826600 1.10E-28 wgd
Lcy10g1995 Lcy-Chr10:44035224 Lcy7g0265 Lcy-Chr7:2301568 7.09E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19038 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g1995 K09338 - csv:101212093 541.962