Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2000 ATGGCGGAACCAGCAGCAGAGCCCAAGGCATTACCCGAGCCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTCACCAACTCTTCTCTTTTGCGGACAAATACGACTGGTTTCTCATGATCCTCGGCAGTCTAGGCGCCATTGTCCACGGCTCTTCCATGCCCGTTTTCTTCCTCCTTTTCGGCGAAATGGTTAATGGCTTCGGAAAAAACCAATCCAATTTTCACAAAATGACATCAGAAGTCTCCAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGTACATTGAGGAAGAAGTATTTAGAGGCTGTTTTGAAACAAGACGTTGGATTCTTCGACACTGATGCCAGAACAGGGGATGTTGTTTTCAGTGTCTCGACAGACACTCTTCTCGTTCAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTCTCGACGTTCTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCATGGAGACTAGCGCTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGGGGTTTATATGCTTACACTCTCACTGGACTCACTTCAAAGAGTCGAGAATCCTATGCCAATGCTGGAATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCGTATGTTGGGGAAAGCAAAGCCCTGAATTCCTATTCAGATTTAATCCAAAACACTTTGAAAATTGGATACAAGGCAGGAATGGCCAAGGGCTTGGGCCTTGGTTGTACCTATGGCATTGCCTGTATGTCTTGGGCTCTCGTCTTCTGGTACGCCGGCGTCTTCATCCGAAACGGCCAGACCGACGGCGGGAAAGCCTTCACTGCTATATTCTCCGCCATCGTTGGTGGCATGAGTTTGGGGCAGTCATTTTCAAATTTGGGAGCATTCAGCAAAGGCAAAGCAGCAGGGTACAAATTGATGGAGATAATCAACCAAAGGCCTTCAATCATTCAAGACCCATTAGATGGGAAGTGTTTGGGTGAAGTCAATGGCAACATTGAGTTTAAAGATGTCACCTTTAGCTACCCATCAAGGCCGGACGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCGGCCGGGAAGACGGTCGCTGTCGTTGGTGGTAGCGGTTCTGGGAAAAGCACTGTCGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAAGTTCTGCTGGACAATGTGGACATAAAGACTCTGCAATTGAAATGGTTACGTGATCAAATTGGGTTAGTGAACCAAGAACCAGCTTTATTTGCGACCACCATATATGAAAACATTCTCTATGGCAAACCCGACGCTACAACAGCGGAGGTCGAAGCCGCTGCAGCTGCAGCCAATGCTCATAGCTTCATCACGTTGCTTCCTAATGGCTACAACACCCAGGTCGGCGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGAATTGCAATCGCCAGAGCAATGCTGAAGAATCCTAAAATCCTTCTCCTCGACGAAGCCACGAGCGCCCTCGACGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACAGTGGTGGTCGCTCATCGACTATCCACCATAAGAAATGTCGATTCAATTGCAGTGATACAACAGGGGCAGGTCGTTGAAACAGGAACTCACGAAGAACTAATCGCCAAATCCGGAGCTTATTCGTCATTAATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCGTCACGGCTGAGCCATTCGTTATCGACAAAATCTTTAAGCCTCCGCTCCGGCAGCCTTCGAAATTTGAGCTATTCGTACAGCACCGGCGCTGATGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGATCGGAAAAATCCAGCACCAGATGGCTATTTCATTCGTCTTCTTAAGCTCAACGGCCCCGAATGGCCTTATTCGATAATGGGCGCTGTTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTGATGAGTAACATGATCGAGGTCTTTTACTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCGGTGGTGGCATATCTAATTCAGCATTATTTCTTTACGATCATGGGTGAGAATCTCACTACCAGAGTCAGAAGAATGATGCTCGCAGCCATTTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAGATTGGCCACTGATGCAGCTGATGTGAAATCCGCCATAGCTGAAAGAATATCAGTGATTCTGCAAAATATGACTTCACTCTTCACTTCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTGATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGATACTGCAAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTTCGGCATGAGCTTCATGTCCCGCAGCGCCAGAGCCTTCGTCGGAGCCAAACCGCAGGCATTCTTTTCGGCATTTCGCAGCTCGCTCTGTATGCCTCTGAGGCTCTGGTTCTATGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTCTCCAAAGTGATCAAAGTCTTTGTTGTTTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTCGGGGCGGCGAATCGATCGGTTCTGTTTTCTCCATTCTCGATCGCCCGACGAGAATTGACCCTGATGATCCTGAGGCAGAGCCTGTTGAGACGCTTCGTGGGGAAATTGAACTTCGACATGTTGATTTCGCGTACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATCTCAGGATCAGGGCTGGTCAGAGTCAGGCATTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCTGTGATTGCCATGATTGAGAGATTCTACGATCCGATTGCCGGGAAAGTCATGATCGATGGGAAGGACATTCGTCGACTGAATTTGCAATCCTTGAGGCTTAAGATTGGATTGGTACAGCAAGAGCCAGCCTTGTTTGCAGCAAGCATTTTTGACAACATTGCATACGGGAAAGATGGAGCAACAGAGGCTGAAGTAATAGAGGCAGCAAGGGCTGCCAATGTGCATGGTTTTGTGAGTGGGCTGCCTGATGGCTACAAGACCCCAGTTGGGGAAAGGGGCGTTCAGCTTTCTGGTGGCCAGAAACAACGCATTGCTATTGCAAGGGCCGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCGACGAGTGCCCTCGACGCCGAGTCGGAGTGCGTGCTCCAAGAGGCTCTGGAAAGACTGATGAGGGGCCGAACCACTGTGCTCGTGGCGCATCGGCTATCGACAATCAGGGGTGTCGACAGCATCGGTGTGGTGCAAGATGGGCGCATCGTGGAGCAAGGCAGCCATAGCGAGCTGCTAAGCCGAGCCGAGGGGGCTTACTCAAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 48.47 MAEPAAEPKALPEPEKKKEQSLPFHQLFSFADKYDWFLMILGSLGAIVHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTSEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPSIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFITLLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELHVPQRQSLRRSQTAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRPTRIDPDDPEAEPVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIAMIERFYDPIAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELLSRAEGAYSRLLQLQHQHI 1250
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 44105673 44112522 - Maker00039703 Lcy10g2000 645511
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2000 1250 FunFam ABC transporter B family member 19 998 1247 - -
Lcy10g2000 1250 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lcy10g2000 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Lcy10g2000 1250 FunFam ABC transporter B family member 1 665 974 - -
Lcy10g2000 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g2000 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Lcy10g2000 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g2000 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lcy10g2000 1250 Pfam ABC transporter transmembrane region 39 312 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lcy10g2000 1250 Pfam ABC transporter transmembrane region 686 956 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lcy10g2000 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g2000 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Lcy10g2000 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Lcy10g2000 1250 SUPERFAMILY ABC transporter transmembrane region 673 994 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lcy10g2000 1250 Gene3D ABC transporter type 1, transmembrane domain 86 982 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lcy10g2000 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Lcy10g2000 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g2000 1250 Gene3D - 998 1250 IPR027417 -
Lcy10g2000 1250 PANTHER ABC TRANSPORTER B FAMILY 9 621 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Lcy10g2000 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Lcy10g2000 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g2000 1250 FunFam ABC transporter B family member 19 353 601 - -
Lcy10g2000 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy10g2000 1250 Gene3D - 361 624 IPR027417 -
Lcy10g2000 1250 SMART AAA_5 1035 1221 IPR003593 GO:0016887(InterPro)
Lcy10g2000 1250 SMART AAA_5 390 582 IPR003593 GO:0016887(InterPro)
Lcy10g2000 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Lcy10g2000 1250 FunFam ABC transporter B family member 1 26 360 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1815 Lcy-Chr10:42481815 Lcy10g2000 Lcy-Chr10:44105673 1.40e-318 dispersed
Lcy10g2000 Lcy-Chr10:44105673 Lcy5g0303 Lcy-Chr5:2856021 0 dispersed
Lcy10g2000 Lcy-Chr10:44105673 Lcy1g0226 Lcy-Chr1:2016431 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2000 K05658 - csv:101212585 2267.27