Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g2000 | ATGGCGGAACCAGCAGCAGAGCCCAAGGCATTACCCGAGCCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTCACCAACTCTTCTCTTTTGCGGACAAATACGACTGGTTTCTCATGATCCTCGGCAGTCTAGGCGCCATTGTCCACGGCTCTTCCATGCCCGTTTTCTTCCTCCTTTTCGGCGAAATGGTTAATGGCTTCGGAAAAAACCAATCCAATTTTCACAAAATGACATCAGAAGTCTCCAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGTACATTGAGGAAGAAGTATTTAGAGGCTGTTTTGAAACAAGACGTTGGATTCTTCGACACTGATGCCAGAACAGGGGATGTTGTTTTCAGTGTCTCGACAGACACTCTTCTCGTTCAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTCTCGACGTTCTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCATGGAGACTAGCGCTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGGGGTTTATATGCTTACACTCTCACTGGACTCACTTCAAAGAGTCGAGAATCCTATGCCAATGCTGGAATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCGTATGTTGGGGAAAGCAAAGCCCTGAATTCCTATTCAGATTTAATCCAAAACACTTTGAAAATTGGATACAAGGCAGGAATGGCCAAGGGCTTGGGCCTTGGTTGTACCTATGGCATTGCCTGTATGTCTTGGGCTCTCGTCTTCTGGTACGCCGGCGTCTTCATCCGAAACGGCCAGACCGACGGCGGGAAAGCCTTCACTGCTATATTCTCCGCCATCGTTGGTGGCATGAGTTTGGGGCAGTCATTTTCAAATTTGGGAGCATTCAGCAAAGGCAAAGCAGCAGGGTACAAATTGATGGAGATAATCAACCAAAGGCCTTCAATCATTCAAGACCCATTAGATGGGAAGTGTTTGGGTGAAGTCAATGGCAACATTGAGTTTAAAGATGTCACCTTTAGCTACCCATCAAGGCCGGACGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCGGCCGGGAAGACGGTCGCTGTCGTTGGTGGTAGCGGTTCTGGGAAAAGCACTGTCGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAAGTTCTGCTGGACAATGTGGACATAAAGACTCTGCAATTGAAATGGTTACGTGATCAAATTGGGTTAGTGAACCAAGAACCAGCTTTATTTGCGACCACCATATATGAAAACATTCTCTATGGCAAACCCGACGCTACAACAGCGGAGGTCGAAGCCGCTGCAGCTGCAGCCAATGCTCATAGCTTCATCACGTTGCTTCCTAATGGCTACAACACCCAGGTCGGCGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGAATTGCAATCGCCAGAGCAATGCTGAAGAATCCTAAAATCCTTCTCCTCGACGAAGCCACGAGCGCCCTCGACGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACAGTGGTGGTCGCTCATCGACTATCCACCATAAGAAATGTCGATTCAATTGCAGTGATACAACAGGGGCAGGTCGTTGAAACAGGAACTCACGAAGAACTAATCGCCAAATCCGGAGCTTATTCGTCATTAATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCGTCACGGCTGAGCCATTCGTTATCGACAAAATCTTTAAGCCTCCGCTCCGGCAGCCTTCGAAATTTGAGCTATTCGTACAGCACCGGCGCTGATGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGATCGGAAAAATCCAGCACCAGATGGCTATTTCATTCGTCTTCTTAAGCTCAACGGCCCCGAATGGCCTTATTCGATAATGGGCGCTGTTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTGATGAGTAACATGATCGAGGTCTTTTACTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCGGTGGTGGCATATCTAATTCAGCATTATTTCTTTACGATCATGGGTGAGAATCTCACTACCAGAGTCAGAAGAATGATGCTCGCAGCCATTTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAGATTGGCCACTGATGCAGCTGATGTGAAATCCGCCATAGCTGAAAGAATATCAGTGATTCTGCAAAATATGACTTCACTCTTCACTTCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTGATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGATACTGCAAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTTCGGCATGAGCTTCATGTCCCGCAGCGCCAGAGCCTTCGTCGGAGCCAAACCGCAGGCATTCTTTTCGGCATTTCGCAGCTCGCTCTGTATGCCTCTGAGGCTCTGGTTCTATGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTCTCCAAAGTGATCAAAGTCTTTGTTGTTTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTCGGGGCGGCGAATCGATCGGTTCTGTTTTCTCCATTCTCGATCGCCCGACGAGAATTGACCCTGATGATCCTGAGGCAGAGCCTGTTGAGACGCTTCGTGGGGAAATTGAACTTCGACATGTTGATTTCGCGTACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATCTCAGGATCAGGGCTGGTCAGAGTCAGGCATTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCTGTGATTGCCATGATTGAGAGATTCTACGATCCGATTGCCGGGAAAGTCATGATCGATGGGAAGGACATTCGTCGACTGAATTTGCAATCCTTGAGGCTTAAGATTGGATTGGTACAGCAAGAGCCAGCCTTGTTTGCAGCAAGCATTTTTGACAACATTGCATACGGGAAAGATGGAGCAACAGAGGCTGAAGTAATAGAGGCAGCAAGGGCTGCCAATGTGCATGGTTTTGTGAGTGGGCTGCCTGATGGCTACAAGACCCCAGTTGGGGAAAGGGGCGTTCAGCTTTCTGGTGGCCAGAAACAACGCATTGCTATTGCAAGGGCCGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCGACGAGTGCCCTCGACGCCGAGTCGGAGTGCGTGCTCCAAGAGGCTCTGGAAAGACTGATGAGGGGCCGAACCACTGTGCTCGTGGCGCATCGGCTATCGACAATCAGGGGTGTCGACAGCATCGGTGTGGTGCAAGATGGGCGCATCGTGGAGCAAGGCAGCCATAGCGAGCTGCTAAGCCGAGCCGAGGGGGCTTACTCAAGGCTCTTGCAGCTGCAACACCAACACATATGA | 3753 | 48.47 | MAEPAAEPKALPEPEKKKEQSLPFHQLFSFADKYDWFLMILGSLGAIVHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTSEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPSIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFITLLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELHVPQRQSLRRSQTAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRPTRIDPDDPEAEPVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIAMIERFYDPIAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELLSRAEGAYSRLLQLQHQHI | 1250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 44105673 | 44112522 | - | Maker00039703 | Lcy10g2000 | 645511 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g2000 | 1250 | FunFam | ABC transporter B family member 19 | 998 | 1247 | - | - | |
| Lcy10g2000 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 349 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy10g2000 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 363 | 600 | - | - | |
| Lcy10g2000 | 1250 | FunFam | ABC transporter B family member 1 | 665 | 974 | - | - | |
| Lcy10g2000 | 1250 | Pfam | ABC transporter | 383 | 530 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 998 | 1246 | IPR027417 | - | |
| Lcy10g2000 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 363 | 599 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 40 | 328 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy10g2000 | 1250 | Pfam | ABC transporter transmembrane region | 39 | 312 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy10g2000 | 1250 | Pfam | ABC transporter transmembrane region | 686 | 956 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy10g2000 | 1250 | ProSitePatterns | ABC transporters family signature. | 1147 | 1161 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 686 | 973 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy10g2000 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 39 | 336 | - | - | |
| Lcy10g2000 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 673 | 994 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy10g2000 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 86 | 982 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy10g2000 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 675 | 991 | - | - | |
| Lcy10g2000 | 1250 | Pfam | ABC transporter | 1027 | 1175 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | Gene3D | - | 998 | 1250 | IPR027417 | - | |
| Lcy10g2000 | 1250 | PANTHER | ABC TRANSPORTER B FAMILY | 9 | 621 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Lcy10g2000 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 1008 | 1246 | - | - | |
| Lcy10g2000 | 1250 | ProSitePatterns | ABC transporters family signature. | 502 | 516 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | FunFam | ABC transporter B family member 19 | 353 | 601 | - | - | |
| Lcy10g2000 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1244 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | Gene3D | - | 361 | 624 | IPR027417 | - | |
| Lcy10g2000 | 1250 | SMART | AAA_5 | 1035 | 1221 | IPR003593 | GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | SMART | AAA_5 | 390 | 582 | IPR003593 | GO:0016887(InterPro) | |
| Lcy10g2000 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 357 | 600 | IPR027417 | - | |
| Lcy10g2000 | 1250 | FunFam | ABC transporter B family member 1 | 26 | 360 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1815 | Lcy-Chr10:42481815 | Lcy10g2000 | Lcy-Chr10:44105673 | 1.40e-318 | dispersed | |
| Lcy10g2000 | Lcy-Chr10:44105673 | Lcy5g0303 | Lcy-Chr5:2856021 | 0 | dispersed | |
| Lcy10g2000 | Lcy-Chr10:44105673 | Lcy1g0226 | Lcy-Chr1:2016431 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g2000 | K05658 | - | csv:101212585 | 2267.27 |