Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2006 | ATGGATTTAGCCCCAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCCGACAGTGATACTCCGACCAGGATCCCGACCTCTTCCGCCAAGTCGCTGCCTTTCAGTAACGGCGTTCTCAAGCGCCACCACTCCCACGCCCGTCAACCGGTGGTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCAGCTTAGGCGCCCACGCGTTGGACGGATGTGGGGAATTTATGCCCTCCCCTTCCGCCACGCCCACTGATCCCACATCGCTCAAGTGCGCTGCGTGTGGCTGTCACCGCAATTTCCACCGTCGGGAGCCGGAGGAGCCGATTTCCACGTTAGCTATCAATACGGCGGCGACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCACCGATGGCTGGCAACCGGAGCCCGAACTCGGCGTCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACACGCGAATTCGGTGCTGACGCCGAGCCCAAACGCCCGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAGAAAATGCTCCATTTCGCGGAACGAGTGGGATGGAAAATGCAGAAGAGAGACGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACCGCCACACCCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAATGAAGATGGACCAGATGGGGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA | 906 | 57.28 | MDLAPAAITTSSNNTKSPEPDSDTPTRIPTSSAKSLPFSNGVLKRHHSHARQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPEEPISTLAINTAATHVIEYQPHHRHHPPPPPMAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAHANSVLTPSPNARKRFRTKFTNEQKEKMLHFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTDTNGATATPTTAAAATAAVNNEDGPDGGLHMHVGSNGSSSSS | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 44179367 | 44180272 | - | Maker00039260 | Lcy10g2006 | 645517 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2006 | 301 | MobiDBLite | consensus disorder prediction | 277 | 301 | - | - | |
Lcy10g2006 | 301 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lcy10g2006 | 301 | SUPERFAMILY | Homeodomain-like | 190 | 257 | IPR009057 | - | |
Lcy10g2006 | 301 | FunFam | Zinc-finger homeodomain protein 2 | 183 | 257 | - | - | |
Lcy10g2006 | 301 | MobiDBLite | consensus disorder prediction | 130 | 157 | - | - | |
Lcy10g2006 | 301 | Gene3D | - | 184 | 257 | - | - | |
Lcy10g2006 | 301 | MobiDBLite | consensus disorder prediction | 253 | 272 | - | - | |
Lcy10g2006 | 301 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 35 | 254 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Lcy10g2006 | 301 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Lcy10g2006 | 301 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 58 | 109 | IPR006456 | - | |
Lcy10g2006 | 301 | NCBIfam | homeobox domain, ZF-HD class | 196 | 253 | IPR006455 | - | |
Lcy10g2006 | 301 | Pfam | ZF-HD protein dimerisation region | 56 | 110 | IPR006456 | - | |
Lcy10g2006 | 301 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 57 | 109 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0467 | Lcy-Chr10:11126686 | Lcy10g2006 | Lcy-Chr10:44179367 | 2.45E-96 | dispersed | |
Lcy10g2006 | Lcy-Chr10:44179367 | Lcy7g0280 | Lcy-Chr7:2431270 | 3.97E-60 | dispersed | |
Lcy10g2005 | Lcy-Chr10:44163304 | Lcy10g2006 | Lcy-Chr10:44179367 | 9.16E-16 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19042 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2006 | - | - | - | 0.0 |