Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2006 ATGGATTTAGCCCCAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCCGACAGTGATACTCCGACCAGGATCCCGACCTCTTCCGCCAAGTCGCTGCCTTTCAGTAACGGCGTTCTCAAGCGCCACCACTCCCACGCCCGTCAACCGGTGGTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCAGCTTAGGCGCCCACGCGTTGGACGGATGTGGGGAATTTATGCCCTCCCCTTCCGCCACGCCCACTGATCCCACATCGCTCAAGTGCGCTGCGTGTGGCTGTCACCGCAATTTCCACCGTCGGGAGCCGGAGGAGCCGATTTCCACGTTAGCTATCAATACGGCGGCGACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCACCGATGGCTGGCAACCGGAGCCCGAACTCGGCGTCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACACGCGAATTCGGTGCTGACGCCGAGCCCAAACGCCCGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAGAAAATGCTCCATTTCGCGGAACGAGTGGGATGGAAAATGCAGAAGAGAGACGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACCGCCACACCCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAATGAAGATGGACCAGATGGGGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 57.28 MDLAPAAITTSSNNTKSPEPDSDTPTRIPTSSAKSLPFSNGVLKRHHSHARQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPEEPISTLAINTAATHVIEYQPHHRHHPPPPPMAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAHANSVLTPSPNARKRFRTKFTNEQKEKMLHFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTDTNGATATPTTAAAATAAVNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44179367 44180272 - Maker00039260 Lcy10g2006 645517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2006 301 MobiDBLite consensus disorder prediction 277 301 - -
Lcy10g2006 301 MobiDBLite consensus disorder prediction 1 38 - -
Lcy10g2006 301 SUPERFAMILY Homeodomain-like 190 257 IPR009057 -
Lcy10g2006 301 FunFam Zinc-finger homeodomain protein 2 183 257 - -
Lcy10g2006 301 MobiDBLite consensus disorder prediction 130 157 - -
Lcy10g2006 301 Gene3D - 184 257 - -
Lcy10g2006 301 MobiDBLite consensus disorder prediction 253 272 - -
Lcy10g2006 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 254 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy10g2006 301 MobiDBLite consensus disorder prediction 1 47 - -
Lcy10g2006 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Lcy10g2006 301 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Lcy10g2006 301 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Lcy10g2006 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 109 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0467 Lcy-Chr10:11126686 Lcy10g2006 Lcy-Chr10:44179367 2.45E-96 dispersed
Lcy10g2006 Lcy-Chr10:44179367 Lcy7g0280 Lcy-Chr7:2431270 3.97E-60 dispersed
Lcy10g2005 Lcy-Chr10:44163304 Lcy10g2006 Lcy-Chr10:44179367 9.16E-16 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19042 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2006 - - - 0.0