Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2006 ATGGATTTAGCCCCAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCCGACAGTGATACTCCGACCAGGATCCCGACCTCTTCCGCCAAGTCGCTGCCTTTCAGTAACGGCGTTCTCAAGCGCCACCACTCCCACGCCCGTCAACCGGTGGTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCAGCTTAGGCGCCCACGCGTTGGACGGATGTGGGGAATTTATGCCCTCCCCTTCCGCCACGCCCACTGATCCCACATCGCTCAAGTGCGCTGCGTGTGGCTGTCACCGCAATTTCCACCGTCGGGAGCCGGAGGAGCCGATTTCCACGTTAGCTATCAATACGGCGGCGACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCACCGATGGCTGGCAACCGGAGCCCGAACTCGGCGTCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACACGCGAATTCGGTGCTGACGCCGAGCCCAAACGCCCGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAGAAAATGCTCCATTTCGCGGAACGAGTGGGATGGAAAATGCAGAAGAGAGACGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACCGCCACACCCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAATGAAGATGGACCAGATGGGGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 57.28 MDLAPAAITTSSNNTKSPEPDSDTPTRIPTSSAKSLPFSNGVLKRHHSHARQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPEEPISTLAINTAATHVIEYQPHHRHHPPPPPMAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAHANSVLTPSPNARKRFRTKFTNEQKEKMLHFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTDTNGATATPTTAAAATAAVNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44179367 44180272 - Maker00039260 Lcy10g2006 645517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2006 301 MobiDBLite consensus disorder prediction 277 301 - -
Lcy10g2006 301 MobiDBLite consensus disorder prediction 1 38 - -
Lcy10g2006 301 SUPERFAMILY Homeodomain-like 190 257 IPR009057 -
Lcy10g2006 301 FunFam Zinc-finger homeodomain protein 2 183 257 - -
Lcy10g2006 301 MobiDBLite consensus disorder prediction 130 157 - -
Lcy10g2006 301 Gene3D - 184 257 - -
Lcy10g2006 301 MobiDBLite consensus disorder prediction 253 272 - -
Lcy10g2006 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 254 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy10g2006 301 MobiDBLite consensus disorder prediction 1 47 - -
Lcy10g2006 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Lcy10g2006 301 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Lcy10g2006 301 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Lcy10g2006 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 109 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2006 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0467 Lcy-Chr10:11126686 Lcy10g2006 Lcy-Chr10:44179367 2.45E-96 dispersed
Lcy10g2006 Lcy-Chr10:44179367 Lcy7g0280 Lcy-Chr7:2431270 3.97E-60 dispersed
Lcy10g2005 Lcy-Chr10:44163304 Lcy10g2006 Lcy-Chr10:44179367 9.16E-16 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19042 None None None None Lcy TF