Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2014 ATGGCTTCATTGGGGATAATTTTACTGGGTATTTTTTTGACGGTGTCGTGTGTTAATGGCGATTTTGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGAGGAAGTGATGCTTCTGGGACAATGGGAGGGGCTTGTGGATATGGGAATTTGTACAGCCAAGGGTATGGGACGAACACGGCGGCGCTGAGCACGGCGCTGTTTGACAATGGGCTGAGCTGCGGCGCTTGCTTTGAGCTGCGGTGTGTGAATGATCCGCAGTGGTGTATTCCGGGCACCATTGTTGTCACTGCCACTAACTTTTGCCCTCCCGGCGGCTGGTGCGACCCTCCCAACCACCATTTTGACCTGTCGCAGCCAATCTTTCAGCACATTGCCCAATATCGTGCCGGAATCGTCCCCGTCGCCTACCGGAGGGTGAGATGTAGGAGAAGTGGGGGAATAAGGTTCACAATAAACGGACATTCATACTTCAACTTGGTGCTGATAACAAACGTGGGCGGTGCCGGAGACGTGCATGCAGTGGCGATAAAGGGTTCAAAAACCCGATGGCAACCAATGTCGAGAAATTGGGGCCAAAACTGGCAGTCAAATTCTTATCTCAACGGACAGAGCCTCTCCTTCCTGGTCACAGCCAGTGACGGACGACAAGTCCTCTCCTACAACGTCGCTCCTTCCGGCTGGTCGTTCGGACAAACCTACGTCGGCGCACAGTTTCGCTACTAA 726 53.03 MASLGIILLGIFLTVSCVNGDFGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSYNVAPSGWSFGQTYVGAQFRY 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44274019 44276645 - Maker00039481 Lcy10g2014 645525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2014 241 FunFam Expansin 15 143 - -
Lcy10g2014 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Lcy10g2014 241 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Lcy10g2014 241 SUPERFAMILY Barwin-like endoglucanases 24 165 IPR036908 -
Lcy10g2014 241 CDD DPBB_EXPA_N 24 142 - -
Lcy10g2014 241 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Lcy10g2014 241 Pfam Lytic transglycolase 60 137 IPR009009 -
Lcy10g2014 241 Gene3D - 14 143 IPR036908 -
Lcy10g2014 241 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Lcy10g2014 241 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
Lcy10g2014 241 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576(InterPro)
Lcy10g2014 241 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Lcy10g2014 241 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Lcy10g2014 241 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576(InterPro)
Lcy10g2014 241 SMART dpbb_1 60 137 IPR007112 -
Lcy10g2014 241 Gene3D - 147 239 IPR036749 -
Lcy10g2014 241 FunFam Expansin 147 239 - -
Lcy10g2014 241 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 82 93 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 55 69 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Lcy10g2014 241 Pfam Expansin C-terminal domain 148 225 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2014 Lcy-Chr10:44274019 Lcy4g1224 Lcy-Chr4:27626994 2.76E-133 dispersed
Lcy10g2014 Lcy-Chr10:44274019 Lcy2g0567 Lcy-Chr2:4877217 1.29E-143 wgd
Lcy10g2014 Lcy-Chr10:44274019 Lcy5g2536 Lcy-Chr5:48146177 9.61E-130 wgd
Lcy10g2014 Lcy-Chr10:44274019 Lcy7g0294 Lcy-Chr7:2530779 1.62E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2014 K20628 - csv:101220358 469.929