Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2040 ATGGCTAAGAAAGACGACTCTGCAAGAGCTCCACTCCAGCGCCCCACAATTACTCTGCCGCCTCGCCCTTCCATCGAGGCCTTTTTCGCCGGCGGACCCACTGGGGTTAGCCCTGGCCCTATGACTCTCGTCTCCAGTTTCTTTGCCGACGCTGCCGTTGACTCGCCCTCCTTCTCCCAGCTTCTCGCCGGAGCCATGGGCTCTCCCATGGCTATGGGCTTTCTCGGAACTGGCTCCACCCCCAATTATTACGCCAAGGATGGAGGCGCCTCCGAATTGGAATTTGGTCTCAAACAATCCAAGCCGCTCAATTTGGTCGTCGCTCGCTCTCCTTTGTTCTCGGTCCCGTCGGGGCTCAGCCCCTCTGGGTTGCTTAATTCACCGGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCATCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCACTGGCACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACGGAAACATTGACACGCGATCCATCATTTACTCTTGATGAAGCATCTCAACAGTCAATATTACCCTCCACATCAGACACAAAAAATCTCATTGCAGAATCAACAGAAGTCTCTCACTCTGATAGAAAATACCAACCTCCTCCTCCCCATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACACATTTAAATTGCCCCGTTAAAAAGAAGATCGAGCGCTCGCCTGACGGTCAAATTACCGAAATTATTTACAAAGGGCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGCGAACCAACTGGGTGTACAAATTCTTTGATGAAGCCTGAAAGTGCATCCCAAAATCAAGCTGGAATTTTAAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACAAGCTGATACGGAGATAACAGACGACAGAGATGAAGATGAGCCAAACCCCAAGAGGCAGAACATTGAGTCAGGGACATCTGCTGTTGCTTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGTGAGGTCGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTAGAGAGGTCTTCAACAGACTCGAAAGCTGTCGTAACTACGTACGAAGGCAAACATAACCACGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACAGCCAACAATACAGTGCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAAGTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 48.05 MAKKDDSARAPLQRPTITLPPRPSIEAFFAGGPTGVSPGPMTLVSSFFADAAVDSPSFSQLLAGAMGSPMAMGFLGTGSTPNYYAKDGGASELEFGLKQSKPLNLVVARSPLFSVPSGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSVPAPTETLTRDPSFTLDEASQQSILPSTSDTKNLIAESTEVSHSDRKYQPPPPHASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSLMKPESASQNQAGILNKSSENVQLGSSDSEEQADTEITDDRDEDEPNPKRQNIESGTSAVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTANNTVPQIKPHKVVAQKHPLLKEMEFGSNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44502823 44507840 - Maker00039492 Lcy10g2040 645551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2040 504 MobiDBLite consensus disorder prediction 281 369 - -
Lcy10g2040 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 MobiDBLite consensus disorder prediction 208 234 - -
Lcy10g2040 504 MobiDBLite consensus disorder prediction 1 31 - -
Lcy10g2040 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 SUPERFAMILY WRKY DNA-binding domain 228 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 MobiDBLite consensus disorder prediction 162 181 - -
Lcy10g2040 504 MobiDBLite consensus disorder prediction 159 181 - -
Lcy10g2040 504 FunFam WRKY transcription factor 219 290 - -
Lcy10g2040 504 FunFam WRKY transcription factor 33 377 443 - -
Lcy10g2040 504 MobiDBLite consensus disorder prediction 298 338 - -
Lcy10g2040 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 161 469 IPR044810 GO:0003700(InterPro)
Lcy10g2040 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2040 504 Pfam WRKY DNA -binding domain 391 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2040 Lcy-Chr10:44502823 Lcy11g0042 Lcy-Chr11:418245 1.82E-77 dispersed
Lcy8g1705 Lcy-Chr8:43605441 Lcy10g2040 Lcy-Chr10:44502823 2.48E-73 transposed
Lcy10g2040 Lcy-Chr10:44502823 Lcy7g0314 Lcy-Chr7:2684309 3.22E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19046 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2040 - - - 0.0