Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2044 ATGCCTTCTCTCCCCAGTCTCCCCTTCTCCTCTCCCATGTGGACCCAGCTTTGCCTGAGGCGGACCTCCCCTCCTCTCAATGCCCACCACGACCTTAACCTCACCGCCGCCGCCCCCGATGACAGCCCCATCACCACCACCGTCGAGTGCTACGCCTGCACCCAAGTCGGCGTCCCGGCCTTCCACTCCACCAGCTGCGACCACGCCCACCAGCAGCCCCAATGGGAGGCCTCCGCCGGCTCTTCCCTCGTCCCCATTCAGCCCACCAAGGCCTCCCCTCGCCGCCCCGCCCCGCACCATCCTTCCGGCCGCTTCGGCACCGTTCTCGACCCGAGAACCAAGCGGGTCCAGAGATGGAACCGGGCTCTGCTATTGGCCCGTGGAATGGCCCTCGCCGTCGACCCTCTCTACTTCTACGCGCTCTCCATCGGACGCGGTGGGTCGCCCTGCCTCTACATGGACGGCGGATTGGCCGCCGTCGTCACCGTCCTCCGCACCTGCCTCGATTTCGTGCACTTGTGGCACGTTTGGCTCCAATTCCGCCTCGCCTACGTGTCCAAGGAGAGCATGGTGATTGGCTGCGGCAAACTCGTGTGGGACGCACGTGCCATCGCCTCTCATTACGTTCGTTCCTTCAAAGGCTTCTGGTTCGATGCCTTTGTCATCCTCCCAGTTCCTCAGATTGTTTATTGGTTGGTTTTACCAAAACTAATCAGAGAAGAGAGAATCAAACTTATAATGACAGTAATCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTCTACCACTCCATTATTCTAATGAGAAGAATGCAGAAGGTCACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCCTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAGCGAGTCGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAACCTATCTCTGTCTTGCGCCGAGGAGGTCTGTTATCAGTTTCTCTCATCGGCTACGACGATTGGAAATTCGTGTGGTCGTAATTCGACTACTACATTTAGGAAGCCACTGTGCTTGGATGTTAATGGTCCATTCGCCTATGGCATCTACAAATGGGCTCTTCCAGTCATTTCTAGCAATTCAATTGCTGTCAAAATCCTCTATCCCATCTTTTGGGGCTTAATGACTCTCAGCACCTTTGGCAATGATCTCGAGCCCACGAGTGAGTTTGCTTGTGCAAATGTAGCTAAAAGTTTTCCTCTTCTGTTGACAACAAGTCCTTCCCATTTCTTCAAAAAGGTTCTTTTGCACGCCGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAGACAACGAGTTCGACACTATGAACACCAGAGATGGGCAGCCATGGGCGGGGAAGATGAGATGGAGCTAATCAATGATTTGCCTGAAGGTCTTAGAAGAGACATTAAACGTCATCTTTGTGTTGATCTCATCAGAAAGGTGCCTCTGTTCCAAAACCTGGATGAGCTTATTCTCGACAACATCTGCGATCGAGTCAAGCCACTTGTATTCTCTAAAGATGAAAAGATCATCAGAGAAGGAGATCCTGTTCCAAGGATGTTATTCATAGTGTGCGGCCGTATAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCAACAAGTTTGATTGAACCAGGAGGATTTCTCGGCGACGAGCTGCTATCGTGGTGTCTCCGGCGCCCATTTCTCGAGAGGCTTCCAGCTTCATCAGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAATACATAACCGATCACTTCCGCTACAAATTCGCCAACGAGCGACTTAAGAGAACAGCAAGATACTACTCTTCAAACTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGCTACCGAAAGAGGATGAGACGTCCAGTGATAGCTGTGGTGGAAAATGGAAGCAATGAACGTCGGCTTCTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2127 51.15 MPSLPSLPFSSPMWTQLCLRRTSPPLNAHHDLNLTAAAPDDSPITTTVECYACTQVGVPAFHSTSCDHAHQQPQWEASAGSSLVPIQPTKASPRRPAPHHPSGRFGTVLDPRTKRVQRWNRALLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLAAVVTVLRTCLDFVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARAIASHYVRSFKGFWFDAFVILPVPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCAEEVCYQFLSSATTIGNSCGRNSTTTFRKPLCLDVNGPFAYGIYKWALPVISSNSIAVKILYPIFWGLMTLSTFGNDLEPTSEFACANVAKSFPLLLTTSPSHFFKKVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRQRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLDELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRIKRSQSLSKGMTATSLIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44534837 44539402 - Maker00039549 Lcy10g2044 645555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2044 708 MobiDBLite consensus disorder prediction 77 108 - -
Lcy10g2044 708 Gene3D Jelly Rolls 519 637 IPR014710 -
Lcy10g2044 708 ProSiteProfiles cAMP/cGMP binding motif profile. 521 600 IPR000595 -
Lcy10g2044 708 Gene3D Helix hairpin bin 447 512 - -
Lcy10g2044 708 SMART cnmp_10 521 646 IPR000595 -
Lcy10g2044 708 SUPERFAMILY cAMP-binding domain-like 448 635 IPR018490 -
Lcy10g2044 708 Pfam Cyclic nucleotide-binding domain 541 630 IPR000595 -
Lcy10g2044 708 SUPERFAMILY Voltage-gated potassium channels 111 414 - -
Lcy10g2044 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 100 675 - -
Lcy10g2044 708 CDD CAP_ED 521 628 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2044 Lcy-Chr10:44534837 Lcy6g0312 Lcy-Chr6:2939425 8.28E-233 dispersed
Lcy10g2044 Lcy-Chr10:44534837 Lcy10g0315 Lcy-Chr10:5737793 6.42E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2044 K05391 - csv:101203560 1246.88