Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2070 ATGAATGCGAATAGTTCTCGATTTCAATCGTTTGGTCAGACTGAGATTAACTGGGACAAGCTTGATAAAGCAAAATTTTATGGCGTAGGAGCTGGTCTCTTTACTGGGATTACAGTTGCACTGTACCCTGTTTCTGTTGTAAAAACAAGGATGCAGGTTGCTGTGAAGGATTCTGCCGAGAAAAATGCATTATCTGTTGTTAAAGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTACAGAGGGTTCGGCACAGTAATAACCGGTGCAATTCCTGCGAGGATTATATTTCTTACCGCTTTGGAGACGACCAAAGTGGGAGCCTTTAAAATGGTTGAGCCATTTAAATTTTCTGAACCTACCCAGGCTGCAATAGCTAATGGATTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTCGTTCCAATTGATGTGATTAGTCAAAAGCTAATGGTTCAAGGATACTCGGGCAATACAAGATATAATGGTGGTTTAGACGTTGCTCGTAAACTGATAAAGGCTAATGGGATCAGGGGATTGTACAAAGGTTTTGGGTTATCTGTTATGACATACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCGTCATCTGGAGGTTCTTAGGCCAGAACTCTGCTTCTGAGAAATTTGCTCCTAGCCATGCGCAACTTATTTCAGTTCAGGCTGCGGGTGGGATAATTGCAGGTGCAACAGCTTCCTGCATTACAACACCATTGGACACTATAAAGACTCGCTTACAGGTGATGGGTGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTAATTGCTGAGGATGGATGGAAAGGTTTTTACAGGGGGTTGGGTCCTCGATTTTTCAGCATGTCAGCCTGGGGAACCTCGATGATATTGGCTTACGAGTACTTGAGTATGGACTTCTCACAAAATATAGCCTGCACTCTATTCAGCGCTTGTGTGCAAAAGATGTGCAGACTTGACCTCAGCGACGATTTTAGAGCCGAAGCTCGTCTGGTTTCAACTCTTTTTTTCCCCTCACAGTCACAAGGGCAGGTTCAGGTTCAGTCAGGTTCAGCATAG 1104 43.84 MNANSSRFQSFGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNALSVVKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAFKMVEPFKFSEPTQAAIANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYNGGLDVARKLIKANGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEKFAPSHAQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLSMDFSQNIACTLFSACVQKMCRLDLSDDFRAEARLVSTLFFPSQSQGQVQVQSGSA 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44769764 44774324 - Maker00039839 Lcy10g2070 645581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2070 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
Lcy10g2070 367 SUPERFAMILY Mitochondrial carrier 19 311 IPR023395 -
Lcy10g2070 367 Gene3D Mitochondrial carrier domain 26 321 IPR023395 -
Lcy10g2070 367 FunFam Mitochondrial substrate carrier family protein 27 317 - -
Lcy10g2070 367 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085(InterPro)
Lcy10g2070 367 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085(InterPro)
Lcy10g2070 367 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085(InterPro)
Lcy10g2070 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
Lcy10g2070 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 314 IPR018108 -
Lcy10g2070 367 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 312 - -
Lcy10g2070 367 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Lcy10g2070 367 Pfam Mitochondrial carrier protein 31 106 IPR018108 -
Lcy10g2070 367 Pfam Mitochondrial carrier protein 235 312 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2070 Lcy-Chr10:44769764 Lcy11g1313 Lcy-Chr11:36633564 2.46E-97 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2070 K15121 - csv:101206140 593.578