Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2079 ATGGGTGCTGTCTGCTGCTGCTTGAGTGTCGAGGATTTCGAAGACTATGTTAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTCAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTACATTCTATCTCTTCATCAATTCAAGGGGCAACATCTATGAATACTACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCGTTGCCTTATGATGCTGATCCTAGATACATCCGCTTGCAGCGGGATGGATTAATTTCTAGACGGGAGAAGGGGTCAAGCCATTTACACGAGGAATCAGAACCTTTAAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCGTCTCTAAAGTTTCCTTCAACTAAATCTACCTCTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGATGCCTGAGATGCAGTTGATGGGAGGAAGATATATTATTAAGAAAGAGAAGGTTAACAGTGCAATCTGCTACTATGCATGCTTGCAAATGGTAAAGAAAGATCATGGATCAGTGAGGGAATGGTGGGATAGGATAGAGAGCATACTGAAGAGGATACGCTCCCACCAATCCAACATGTACAGCCCAAACAGAGATGAAATTGAGGAAGACTTGATTCGACTGCCCTGCGTTGAAGCTTCAGAGATTGGAGCTTTAGAAATTAGAGCAAACAATGCGCTGGGGCAAGAAATGGACATTGATGATATTTTTGGGATTACCCAGAACGTAAGCCTGCCAAGAAAGAGTGCAATTTATGTTTGGGGTTATAATCAATCGGGCCAGACGGGTCGAAAGGGGAAGGATCATCAATTAAGGGTTCCCAGGCAGCTCCATCCTGATCTATTTGAATGCCTAGATGAAGCTAGTTCTCGATGGCTGGATATTGCTTGTGGTCGTGAACATACAGCAGCTGTGGCTTCTGATGGGTCACTTTTTACCTGGGGTTTGGCCTTAAACGTGCTCTCTGTTTCTGTTATTAAAGTGTTTTTGATGACCAGAATTTCGTTTCTTTTGAAATATTCTTATCAAATGAAATTATCAGGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAGGCTGAGTTTGTGAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTGCAGAACCTCGTGAGAATGATGGCTCCATTTCAACTAGTAGACTCTGGATTTGGGGACAAAATCAGGGATCCAATTTGCCTCGCTTATTTTGGGGAGCCTTCACCCCAAAAACGATTATTCGTCAAGTGTCCTGTGGGGCAGTTCATGTAGTGGCATTATCGGAGGATGGCCAAATGCAAGCTTGGGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGCTCGCATTATAAGTGCTTATGCAAAGTTCCTTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGCGAGGTGTAA 1788 43.12 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSISSSIQGATSMNTTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKMPEMQLMGGRYIIKKEKVNSAICYYACLQMVKKDHGSVREWWDRIESILKRIRSHQSNMYSPNRDEIEEDLIRLPCVEASEIGALEIRANNALGQEMDIDDIFGITQNVSLPRKSAIYVWGYNQSGQTGRKGKDHQLRVPRQLHPDLFECLDEASSRWLDIACGREHTAAVASDGSLFTWGLALNVLSVSVIKVFLMTRISFLLKYSYQMKLSGANDFGQLGDGTEEKSKEPKKVKQLQAEFVKSVSCGAHCTAAIAEPRENDGSISTSRLWIWGQNQGSNLPRLFWGAFTPKTIIRQVSCGAVHVVALSEDGQMQAWGYNEYGQLGRGVTSEGLQGARIISAYAKFLDEAPELVKITKVSCGEYHSAAISENGEV 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44839415 44855162 - Maker00039845 Lcy10g2079 645590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2079 595 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 380 390 IPR000408 -
Lcy10g2079 595 SMART ring_2 177 217 IPR001841 -
Lcy10g2079 595 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 592 IPR000408 -
Lcy10g2079 595 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 427 478 IPR000408 -
Lcy10g2079 595 Pfam Ring finger domain 176 217 IPR001841 -
Lcy10g2079 595 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 393 IPR000408 -
Lcy10g2079 595 MobiDBLite consensus disorder prediction 103 123 - -
Lcy10g2079 595 SUPERFAMILY RING/U-box 171 221 - -
Lcy10g2079 595 CDD RING-H2_AIRP1-like 173 219 - -
Lcy10g2079 595 MobiDBLite consensus disorder prediction 62 76 - -
Lcy10g2079 595 MobiDBLite consensus disorder prediction 103 130 - -
Lcy10g2079 595 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lcy10g2079 595 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 335 595 IPR051210 -
Lcy10g2079 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 222 IPR013083 -
Lcy10g2079 595 MobiDBLite consensus disorder prediction 62 89 - -
Lcy10g2079 595 Pfam Regulator of chromosome condensation (RCC1) repeat 515 544 - -
Lcy10g2079 595 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 579 589 IPR000408 -
Lcy10g2079 595 SUPERFAMILY RCC1/BLIP-II 330 595 IPR009091 -
Lcy10g2079 595 Gene3D - 316 595 IPR009091 -
Lcy10g2079 595 Pfam Regulator of chromosome condensation (RCC1) repeat 433 475 IPR000408 -
Lcy10g2079 595 Pfam Regulator of chromosome condensation (RCC1) repeat 336 390 IPR000408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2079 Lcy-Chr10:44839415 Lcy12g1633 Lcy-Chr12:36667046 9.38E-19 dispersed
Lcy10g2078 Lcy-Chr10:44834550 Lcy10g2079 Lcy-Chr10:44839415 7.00E-55 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2079 - - - 0.0