Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2079 | ATGGGTGCTGTCTGCTGCTGCTTGAGTGTCGAGGATTTCGAAGACTATGTTAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTCAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTACATTCTATCTCTTCATCAATTCAAGGGGCAACATCTATGAATACTACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCGTTGCCTTATGATGCTGATCCTAGATACATCCGCTTGCAGCGGGATGGATTAATTTCTAGACGGGAGAAGGGGTCAAGCCATTTACACGAGGAATCAGAACCTTTAAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCGTCTCTAAAGTTTCCTTCAACTAAATCTACCTCTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGATGCCTGAGATGCAGTTGATGGGAGGAAGATATATTATTAAGAAAGAGAAGGTTAACAGTGCAATCTGCTACTATGCATGCTTGCAAATGGTAAAGAAAGATCATGGATCAGTGAGGGAATGGTGGGATAGGATAGAGAGCATACTGAAGAGGATACGCTCCCACCAATCCAACATGTACAGCCCAAACAGAGATGAAATTGAGGAAGACTTGATTCGACTGCCCTGCGTTGAAGCTTCAGAGATTGGAGCTTTAGAAATTAGAGCAAACAATGCGCTGGGGCAAGAAATGGACATTGATGATATTTTTGGGATTACCCAGAACGTAAGCCTGCCAAGAAAGAGTGCAATTTATGTTTGGGGTTATAATCAATCGGGCCAGACGGGTCGAAAGGGGAAGGATCATCAATTAAGGGTTCCCAGGCAGCTCCATCCTGATCTATTTGAATGCCTAGATGAAGCTAGTTCTCGATGGCTGGATATTGCTTGTGGTCGTGAACATACAGCAGCTGTGGCTTCTGATGGGTCACTTTTTACCTGGGGTTTGGCCTTAAACGTGCTCTCTGTTTCTGTTATTAAAGTGTTTTTGATGACCAGAATTTCGTTTCTTTTGAAATATTCTTATCAAATGAAATTATCAGGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAGGCTGAGTTTGTGAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTGCAGAACCTCGTGAGAATGATGGCTCCATTTCAACTAGTAGACTCTGGATTTGGGGACAAAATCAGGGATCCAATTTGCCTCGCTTATTTTGGGGAGCCTTCACCCCAAAAACGATTATTCGTCAAGTGTCCTGTGGGGCAGTTCATGTAGTGGCATTATCGGAGGATGGCCAAATGCAAGCTTGGGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGCTCGCATTATAAGTGCTTATGCAAAGTTCCTTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGCGAGGTGTAA | 1788 | 43.12 | MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSISSSIQGATSMNTTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKMPEMQLMGGRYIIKKEKVNSAICYYACLQMVKKDHGSVREWWDRIESILKRIRSHQSNMYSPNRDEIEEDLIRLPCVEASEIGALEIRANNALGQEMDIDDIFGITQNVSLPRKSAIYVWGYNQSGQTGRKGKDHQLRVPRQLHPDLFECLDEASSRWLDIACGREHTAAVASDGSLFTWGLALNVLSVSVIKVFLMTRISFLLKYSYQMKLSGANDFGQLGDGTEEKSKEPKKVKQLQAEFVKSVSCGAHCTAAIAEPRENDGSISTSRLWIWGQNQGSNLPRLFWGAFTPKTIIRQVSCGAVHVVALSEDGQMQAWGYNEYGQLGRGVTSEGLQGARIISAYAKFLDEAPELVKITKVSCGEYHSAAISENGEV | 595 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 44839415 | 44855162 | - | Maker00039845 | Lcy10g2079 | 645590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2079 | 595 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 380 | 390 | IPR000408 | - | |
Lcy10g2079 | 595 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
Lcy10g2079 | 595 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 532 | 592 | IPR000408 | - | |
Lcy10g2079 | 595 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 427 | 478 | IPR000408 | - | |
Lcy10g2079 | 595 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
Lcy10g2079 | 595 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 334 | 393 | IPR000408 | - | |
Lcy10g2079 | 595 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
Lcy10g2079 | 595 | SUPERFAMILY | RING/U-box | 171 | 221 | - | - | |
Lcy10g2079 | 595 | CDD | RING-H2_AIRP1-like | 173 | 219 | - | - | |
Lcy10g2079 | 595 | MobiDBLite | consensus disorder prediction | 62 | 76 | - | - | |
Lcy10g2079 | 595 | MobiDBLite | consensus disorder prediction | 103 | 130 | - | - | |
Lcy10g2079 | 595 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
Lcy10g2079 | 595 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 335 | 595 | IPR051210 | - | |
Lcy10g2079 | 595 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 222 | IPR013083 | - | |
Lcy10g2079 | 595 | MobiDBLite | consensus disorder prediction | 62 | 89 | - | - | |
Lcy10g2079 | 595 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 515 | 544 | - | - | |
Lcy10g2079 | 595 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 579 | 589 | IPR000408 | - | |
Lcy10g2079 | 595 | SUPERFAMILY | RCC1/BLIP-II | 330 | 595 | IPR009091 | - | |
Lcy10g2079 | 595 | Gene3D | - | 316 | 595 | IPR009091 | - | |
Lcy10g2079 | 595 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 433 | 475 | IPR000408 | - | |
Lcy10g2079 | 595 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 336 | 390 | IPR000408 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2079 | Lcy-Chr10:44839415 | Lcy12g1633 | Lcy-Chr12:36667046 | 9.38E-19 | dispersed | |
Lcy10g2078 | Lcy-Chr10:44834550 | Lcy10g2079 | Lcy-Chr10:44839415 | 7.00E-55 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2079 | - | - | - | 0.0 |