Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2086 ATTGTTGGAAACCCTCTGATCTGTGCAACCGGGTCTGAGGCCGGTTGCCACAGTACAACTCTAATGCCCATGTCCATGAATTTGAACACTACACAAAACCGACAACACAATGAAATTTCTCTTGGAAATCTGAGAAGGTTCCAATTTAGGGAACTTCAGATAGCAACAAACGACTTCAGCAGCAAGAACATACTAGGAAAGGGAAGTTTTGGAAATGTTTACAAAGGAATTCTTTTGGATGGAACAGTTGTAGCTGTTAAAAGGCTCAAAGATGACAATACAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATTATCAGCCTAGCCGTGCATCGTCATCTCCTCAGACTATACGGGTTTTGCAATACACCAACCGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTCACCTCCCATCTCAAAGGCAACAGAGCTGCAAAGGGATTGTTATACCTCCATGAACAGTGCAACCCAGAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTCGACGACTATTGCAACGAACCGCAGAACTCTAAATTTACAACTCACCCAGTATTTTCTACGGGAATTTTCCAATTCTCCTATAGGAGTGAGAAAGAGTTTGATCAACGAGTCAAATGGAAGATATTGCAAAGGCCGCTAGGATCTTCAACAAATTCTCTCGATGTGCAGTGGAGTTTGAAATTGCCCCCTGAATCTTTGATGAATACCATGGAGATGTTCCGTTCAGCTTTGGCGAATGTGAGCTTGACTGATCCGCAGTTGCCTCTTGGACAAGGGGCTGATCCGTATTCAGCTTTGGCGAATGTGGGCTTGGCTGATTCGCAGTTGCCTCTTGGACAAGGGGCTGATCCGCAGTTGCCTCCTGGACAAGGGGCTGAACAGGATTTTCAACAAATTCTTTCGATGGTCATGACTAGTCCTGCAATGGAGTTTGAAATTGGCCCTGAATCTTTGATGAATACCATGGAGATGTTCAGTTCAGCTTTGGCGAATGTGGGCTTGGCTGATCCGCAGTTGCCTCTTGGACAAGGGGCTGAATCGCAGTTGCCTTCTAGACAGGGGATGTGCACATGA 1104 45.02 IVGNPLICATGSEAGCHSTTLMPMSMNLNTTQNRQHNEISLGNLRRFQFRELQIATNDFSSKNILGKGSFGNVYKGILLDGTVVAVKRLKDDNTSRGEIQFQTEVEIISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVTSHLKGNRAAKGLLYLHEQCNPEIIHRDVKAANILLDDYCNEPQNSKFTTHPVFSTGIFQFSYRSEKEFDQRVKWKILQRPLGSSTNSLDVQWSLKLPPESLMNTMEMFRSALANVSLTDPQLPLGQGADPYSALANVGLADSQLPLGQGADPQLPPGQGAEQDFQQILSMVMTSPAMEFEIGPESLMNTMEMFSSALANVGLADPQLPLGQGAESQLPSRQGMCT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44921008 44927580 - Maker00039894 Lcy10g2086 645597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2086 367 Pfam Protein kinase domain 60 178 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2086 367 SMART serkin_6 59 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2086 367 FunFam Somatic embryogenesis receptor kinase 1 28 135 - -
Lcy10g2086 367 Gene3D Phosphorylase Kinase; domain 1 28 135 - -
Lcy10g2086 367 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 182 - -
Lcy10g2086 367 SUPERFAMILY Protein kinase-like (PK-like) 33 181 IPR011009 -
Lcy10g2086 367 Gene3D Transferase(Phosphotransferase) domain 1 136 215 - -
Lcy10g2086 367 ProSiteProfiles Protein kinase domain profile. 59 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2086 367 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524(InterPro)
Lcy10g2086 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2086 Lcy-Chr10:44921008 Lcy7g0388 Lcy-Chr7:3288478 3.06E-71 dispersed
Lcy10g2086 Lcy-Chr10:44921008 Lcy10g2094 Lcy-Chr10:45009126 8.72E-98 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65424 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2086 - - - 0.0