Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2094 ATGGGAATGAGGAGAACTGAGGCTACTGCTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGCTATCTCCTAAAGGTGTAAACTATGAAGTCCAAGCTCTGATGGGTATAAAAGCTTCCCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGACTCTGTTGACCCATGTAGCTGGACTATGGTTACTTGCTCCCCTGAGAGCCTTGTCATTGGCCTAGGAACTCCAAGCCAGAATCTGTCTGGGACCCTTTCTTCAAGCATTGGGAATTTAACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATTACAGGCCCAATTCCCCCAGAGCTTGGAAGGCTCTCAAAGCTTCAAACACTTGATCTATCAAACAACTCCTTCACTGGGGGAATTCCTTCTTCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGCAATTCCAATGTCTTTAGCCAACATGACCCAGCTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAACCCTCTGATCTGTGCAACCGGGTCTGAGGCCGGTTGCCACGGTACAACTCTGATGCCCATGTCCATGAATTTGAACACTACACAAACTGGTTTGCCTCCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTATCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGGCGAAGCAATCGGCCCACATTCTTCGATGTAAAAGACCGACAACACGAGGAAATTTCCCTTGGAAATCTGAGAAGGTTCCAATTTAGGGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTCGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACAGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCTAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCATCGTCATCTCCTCAGACTATACGGTTTTTGCAATACACCGACCGAAAGGCTTCTTATTTACCCATATATGTCAAACGGAAGCGTCGCCTCCCGTCTTAAAGGAAAACCGGTACTAGACTGGGGAACAAGAAAGAGAATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTCCATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTCGACGACTACTGCGAGGCCGTCGTTGGAGATTTCGGGTTGGCAAAGCTTCTGGACCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACTGTTGGACATATAGCTCCCGAGTATCTCTCCACTGGACAGTCATCCGAGAAAACAGACGTTTTCGGATTCGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTGGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATTTGAAAGGAAACTATGACAGAGTTGAGCTAGAGGAGATGGTTCAAGTGGCTCTGTTATGCACACAATATCTACCAGGACACAGACCAAAGATGTCAGAAGTAGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAAAGAGTTGATACATCAAAGTGCAAACCCCATGATTTCTCTTCATCAGACAGATACTCTGATCTCACAGATGACTCTTCATTGTTGGTTCAAGCAATGGAGCTCTCTGGTCCAAGGTGA 1881 45.24 MGMRRTEATASCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNSFTGGIPSSLGHLRSLQYLRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNTTQTGLPPVRLKSHKMALTFGLSLSCLCLIVLVFGLFIWWRRRSNRPTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLIYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKGNYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDTSKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45009126 45013953 - Maker00039828 Lcy10g2094 645605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2094 626 SMART serkin_6 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2094 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2094 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Lcy10g2094 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Lcy10g2094 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Lcy10g2094 626 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Lcy10g2094 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Lcy10g2094 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Lcy10g2094 626 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515(InterPro)
Lcy10g2094 626 Pfam Protein kinase domain 307 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2094 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Lcy10g2094 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Lcy10g2094 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Lcy10g2094 626 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Lcy10g2094 626 SUPERFAMILY L domain-like 35 198 - -
Lcy10g2094 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2094 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2094 Lcy-Chr10:45009126 Lcy13g1261 Lcy-Chr13:29715591 5.79E-232 dispersed
Lcy10g2086 Lcy-Chr10:44921008 Lcy10g2094 Lcy-Chr10:45009126 8.72E-98 proximal
Lcy2g0208 Lcy-Chr2:1646940 Lcy10g2094 Lcy-Chr10:45009126 2.93E-217 transposed
Lcy10g2094 Lcy-Chr10:45009126 Lcy7g0388 Lcy-Chr7:3288478 2.53E-284 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65425 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2094 - - - 0.0