Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2106 ATGTGCGAGCTGAAGATTGGCTCCAGCAAGTCGCCCCCACGTCTTGTGAAACCACCCCCACTATCATCACCAAAGGATATTTCTGGGGTAACCAAGTGGACTTGGGAGATTCCATTTTCGACCTTCAAGACTTGGTCACCAGAGGGAAATTTCATCGCTTCAGCCAGCGAGAGATTTGAGGTTTTGAATTGGATTATGGCTTCTTCACCTTCTCCAAGTACTTCTCCTCCTGAAAATCCGTCAGATTCCACAGCTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAGTCTGCATTATCTCCCTCATCTCCTACATCTTCTGTGCCTAATCAGACCGGTGAACCTCCTTCATCACCTTCTACTCCTTCAGCTCCACCTCCTCAATCACCACCAACAGTTCCTGATTCTCCTCCTCCTTCTCCTACATTGTCTCCTCCTCCTGTGACAGCATCCCCACCTCCTTCTCCTGCTAGTTCCCCACCTCCGCCACCACAATCGTCGCCGTCGCTGCCGCCTCCTTCACCATCTTCCTCCCCCCCACCACCTCCAACATCAACCTCTCCACCACCACCTTCAACATCACCACCACCACCTTCCTCTGATTCACCACCTCCCCCAGACCCATCCACTGCCTCTCCTCCTCCTGAAGCTTCACCTCCCCCTCCTGATTCATCGCCGCCGCCACCACCAGCAGGTGGTTCTCCACCTCCTCAATCCAATCCTAGACCTCCATTTTCAACTCCTTCTCCCCCTCCCCCTGATGTAATTTCGCCTTCTCCACCTCCACCAACTAAAGTCCCAACACCGCCTTCACCAACAGGAGAATCACCTAAAGTATCTCCCCCGTCCCCCAAGGTTTCTCCTCCTCCTTCTGATTCTCAATCTCCACCTTCAGTTGATGCCCCTCCACCAAGAACTACAGTACCATCACCTCCTCCTTCAGTCCCTTCATCATCTGCTCCTCCTCCAGTTACTGTTCCTGGTCCTCCATCTAATTCATCTGGTGCGAGTCCTACTATCCCTCCAACTTCTGTTACACCTGAACGACCAATTCCAACAATCAATGGTACCAATGTTACAGCAAATGACTCAATCAGAGGTCGGGGTTTCAGCACTGGAACATCTGTGGCAGTTGGCAGCGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTATGTGGTTTGTTCAGAAACGGAAGAGACGAAAGAAGAATATCCCTTACACAATGCCCTCTCCTTTTTCCTCCCAAAACTCAGATTCCTTTTTCCTAAGGCCCAATTCTTCAGCTCCCGTGGTAGGAAGTCGTACTGATAGTGATTTCAAGTATCCATCATCAGAAGGAGGTGGAGTAGGTAATTCAAGATCATTTCCTTATGAAGAGCTGCACCAGGCAACAAGTGGATTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTTCAGATGGAAGAGACGTAGCCGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTCGGTTACTGTATCTCTGATTACCAAAGATTGCTCGTGTATGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGGTTCAAACAGGCCAGTTCTGGCTTGGGCTACACGTGTTCGAATTGCTGCTGGTGCAGCCCGTGGAATTGCCTACCTACATGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCATCTAACATTCTGCTCGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCATTGGATTCACATACACATGTAACAACTCGTGTAATGGGAACGTTTGGGAATTACAAATGGCCTGTTCAATACATGGCTCCAGAATACGCAACGAGTGGGAAATTGACGGATAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTAGATTCTTCTCAGCCTCTAGGGGATGAGAGTTTAGTTGAATGGGCTCGACCATTGCTTGCTCAAGCTATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTCGACAGAGAAATGTTTCGGATGATCGAAGCAGCCGCCGCTTGCGTTCGTCATTCAGCAGTAAAGAGGCCGAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAAAGTGGAGTGTTTGATTCGGCTGAACATTCTGCTCAGATCAGAATGTTTCAAAGAATGGCTTTTGGCAGTCAGGATTACAGTTACGTTTATTCCGATCGAGATCGAGATCGAGATCGAAGTCGAAGTTATAGTCAAAGTCAGAGTAGCTGGAGTAGAGAATCCAGGGATCAAAGTCCCTCGGCACCTATTAATCGGTCCCGGCAATGGAACATCTAA 2517 48.03 MCELKIGSSKSPPRLVKPPPLSSPKDISGVTKWTWEIPFSTFKTWSPEGNFIASASERFEVLNWIMASSPSPSTSPPENPSDSTAFSPPSPSPPAESALSPSSPTSSVPNQTGEPPSSPSTPSAPPPQSPPTVPDSPPPSPTLSPPPVTASPPPSPASSPPPPPQSSPSLPPPSPSSSPPPPPTSTSPPPPSTSPPPPSSDSPPPPDPSTASPPPEASPPPPDSSPPPPPAGGSPPPQSNPRPPFSTPSPPPPDVISPSPPPPTKVPTPPSPTGESPKVSPPSPKVSPPPSDSQSPPSVDAPPPRTTVPSPPPSVPSSSAPPPVTVPGPPSNSSGASPTIPPTSVTPERPIPTINGTNVTANDSIRGRGFSTGTSVAVGSVVGVLVLSLVIMAMWFVQKRKRRKKNIPYTMPSPFSSQNSDSFFLRPNSSAPVVGSRTDSDFKYPSSEGGGVGNSRSFPYEELHQATSGFSSNNLLGEGGFGCVYKGTLSDGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGSNRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGNYKWPVQYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYVYSDRDRDRDRSRSYSQSQSSWSRESRDQSPSAPINRSRQWNI 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45109045 45116775 + Maker00039294 Lcy10g2106 645617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2106 838 MobiDBLite consensus disorder prediction 1 29 - -
Lcy10g2106 838 FunFam proline-rich receptor-like protein kinase PERK8 546 765 - -
Lcy10g2106 838 SUPERFAMILY Protein kinase-like (PK-like) 452 750 IPR011009 -
Lcy10g2106 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2106 838 Pfam Protein tyrosine and serine/threonine kinase 473 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2106 838 CDD STKc_IRAK 476 753 - -
Lcy10g2106 838 SMART serkin_6 470 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2106 838 ProSiteProfiles Protein kinase domain profile. 470 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2106 838 MobiDBLite consensus disorder prediction 810 838 - -
Lcy10g2106 838 MobiDBLite consensus disorder prediction 799 838 - -
Lcy10g2106 838 MobiDBLite consensus disorder prediction 115 329 - -
Lcy10g2106 838 MobiDBLite consensus disorder prediction 99 114 - -
Lcy10g2106 838 Gene3D Phosphorylase Kinase; domain 1 443 545 - -
Lcy10g2106 838 Gene3D Transferase(Phosphotransferase) domain 1 546 765 - -
Lcy10g2106 838 MobiDBLite consensus disorder prediction 73 98 - -
Lcy10g2106 838 MobiDBLite consensus disorder prediction 349 365 - -
Lcy10g2106 838 ProSitePatterns Protein kinases ATP-binding region signature. 476 498 IPR017441 GO:0005524(InterPro)
Lcy10g2106 838 MobiDBLite consensus disorder prediction 67 365 - -
Lcy10g2106 838 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 355 786 IPR047117 -
Lcy10g2106 838 FunFam Proline-rich receptor-like protein kinase PERK8 443 545 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2106 Lcy-Chr10:45109045 Lcy2g0819 Lcy-Chr2:7416777 1.77E-145 dispersed
Lcy7g0178 Lcy-Chr7:1578282 Lcy10g2106 Lcy-Chr10:45109045 2.48E-160 transposed
Lcy8g2025 Lcy-Chr8:46488110 Lcy10g2106 Lcy-Chr10:45109045 6.05E-32 transposed
Lcy10g2106 Lcy-Chr10:45109045 Lcy7g0396 Lcy-Chr7:3370972 1.43E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65426 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2106 - - - 0.0