Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2110 ATGGCGGTTCCCGCGGTTCAGTTCCCGATCTTCATGGCTGTCAGAGTGCTCGGGATGATTGTGGCAGCTCTTGCCTTCATCTGGACCTTGCACTTCCGTGGAGGATTGGCGCTTATCTCAGACAACAAGGATCTCATCTTCAATGTCCATCCTGTTCTTATGGTGATTGGACTTATACTTCTAAATGGTGAAGCAATGTTAGCATACAAGACAGTTTCAGGAACCAAAAACTTCAAAAAATTAGTTCATCTTGCCGTACAGTTTGTTGCATTCTGTTTAAGCCTGATTGGCATATGGGCTGCCCTGAAGTTCCACAACGACAAAGGGATCGACAACTTTTACAGTCTGCATTCGTGGTTGGGCCTAGTTTCCATCTTTCTGTTTGGCATCCAGTGGACTGCAGGATTTGTAACTTTTTGGTACCCAGGTGGTTCCAGAAATAGCAGAGCTACTCTGTTGCCATGGCATGTTTTCTTTGGCATTTACATATATGGCATCTCCATTGCTACAGCTGTTACTGGATTGTTAGAAAAGGCTACATTCCTTCAAACTAGCAAGGTAATATTACGCTATTCGAACGAGGCTTTGCTGATAAATTCATTGGGTATCCTCATTGTTCTTCTGGGTGGCCTCGTTATTCTTGCCGTTATCGCTCCATCCAATGGCAAAGGTGACATCTACAGAGGGCCAGCAGAATAG 699 44.78 MAVPAVQFPIFMAVRVLGMIVAALAFIWTLHFRGGLALISDNKDLIFNVHPVLMVIGLILLNGEAMLAYKTVSGTKNFKKLVHLAVQFVAFCLSLIGIWAALKFHNDKGIDNFYSLHSWLGLVSIFLFGIQWTAGFVTFWYPGGSRNSRATLLPWHVFFGIYIYGISIATAVTGLLEKATFLQTSKVILRYSNEALLINSLGILIVLLGGLVILAVIAPSNGKGDIYRGPAE 232
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 45159516 45162545 + Maker00039472 Lcy10g2110 645621
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2110 232 Pfam Eukaryotic cytochrome b561 49 181 IPR006593 -
Lcy10g2110 232 ProSiteProfiles Cytochrome b561 domain profile. 13 217 IPR006593 -
Lcy10g2110 232 PANTHER CYTOCHROME B561-RELATED 1 221 IPR043205 GO:0016491(InterPro)|GO:0016491(PANTHER)
Lcy10g2110 232 FunFam Cytochrome b reductase 1 4 225 - -
Lcy10g2110 232 SMART 561_7 49 175 IPR006593 -
Lcy10g2110 232 CDD Cyt_b561_ACYB-1_like 40 183 - -
Lcy10g2110 232 Gene3D - 2 229 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1591 Lcy-Chr10:40319886 Lcy10g2110 Lcy-Chr10:45159516 1.62E-48 transposed
Lcy12g0015 Lcy-Chr12:463161 Lcy10g2110 Lcy-Chr10:45159516 2.00E-61 transposed
Lcy7g1262 Lcy-Chr7:16212014 Lcy10g2110 Lcy-Chr10:45159516 1.40E-34 transposed
Lcy10g2110 Lcy-Chr10:45159516 Lcy7g0409 Lcy-Chr7:3512643 2.66E-62 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2110 K08360 - csv:101212633 402.519