Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g2110 | ATGGCGGTTCCCGCGGTTCAGTTCCCGATCTTCATGGCTGTCAGAGTGCTCGGGATGATTGTGGCAGCTCTTGCCTTCATCTGGACCTTGCACTTCCGTGGAGGATTGGCGCTTATCTCAGACAACAAGGATCTCATCTTCAATGTCCATCCTGTTCTTATGGTGATTGGACTTATACTTCTAAATGGTGAAGCAATGTTAGCATACAAGACAGTTTCAGGAACCAAAAACTTCAAAAAATTAGTTCATCTTGCCGTACAGTTTGTTGCATTCTGTTTAAGCCTGATTGGCATATGGGCTGCCCTGAAGTTCCACAACGACAAAGGGATCGACAACTTTTACAGTCTGCATTCGTGGTTGGGCCTAGTTTCCATCTTTCTGTTTGGCATCCAGTGGACTGCAGGATTTGTAACTTTTTGGTACCCAGGTGGTTCCAGAAATAGCAGAGCTACTCTGTTGCCATGGCATGTTTTCTTTGGCATTTACATATATGGCATCTCCATTGCTACAGCTGTTACTGGATTGTTAGAAAAGGCTACATTCCTTCAAACTAGCAAGGTAATATTACGCTATTCGAACGAGGCTTTGCTGATAAATTCATTGGGTATCCTCATTGTTCTTCTGGGTGGCCTCGTTATTCTTGCCGTTATCGCTCCATCCAATGGCAAAGGTGACATCTACAGAGGGCCAGCAGAATAG | 699 | 44.78 | MAVPAVQFPIFMAVRVLGMIVAALAFIWTLHFRGGLALISDNKDLIFNVHPVLMVIGLILLNGEAMLAYKTVSGTKNFKKLVHLAVQFVAFCLSLIGIWAALKFHNDKGIDNFYSLHSWLGLVSIFLFGIQWTAGFVTFWYPGGSRNSRATLLPWHVFFGIYIYGISIATAVTGLLEKATFLQTSKVILRYSNEALLINSLGILIVLLGGLVILAVIAPSNGKGDIYRGPAE | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45159516 | 45162545 | + | Maker00039472 | Lcy10g2110 | 645621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g2110 | 232 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
| Lcy10g2110 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 217 | IPR006593 | - | |
| Lcy10g2110 | 232 | PANTHER | CYTOCHROME B561-RELATED | 1 | 221 | IPR043205 | GO:0016491(InterPro)|GO:0016491(PANTHER) | |
| Lcy10g2110 | 232 | FunFam | Cytochrome b reductase 1 | 4 | 225 | - | - | |
| Lcy10g2110 | 232 | SMART | 561_7 | 49 | 175 | IPR006593 | - | |
| Lcy10g2110 | 232 | CDD | Cyt_b561_ACYB-1_like | 40 | 183 | - | - | |
| Lcy10g2110 | 232 | Gene3D | - | 2 | 229 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1591 | Lcy-Chr10:40319886 | Lcy10g2110 | Lcy-Chr10:45159516 | 1.62E-48 | transposed | |
| Lcy12g0015 | Lcy-Chr12:463161 | Lcy10g2110 | Lcy-Chr10:45159516 | 2.00E-61 | transposed | |
| Lcy7g1262 | Lcy-Chr7:16212014 | Lcy10g2110 | Lcy-Chr10:45159516 | 1.40E-34 | transposed | |
| Lcy10g2110 | Lcy-Chr10:45159516 | Lcy7g0409 | Lcy-Chr7:3512643 | 2.66E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g2110 | K08360 | - | csv:101212633 | 402.519 |