Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g2131 | ATGGCCGTCACGTTTGCACTCGTTCTTACAACCCTGGCCTTGGCTGCGACGTCGTTTTTCATCTTCTCTTTGTTATACGACACCCTTTCCTCCTACTGCCTCACTCCTAGACGCATCAAAAACAAGATGGCCAAGCAAGGTGTGCGTGGCCCCAAACCCCGCCCTCTCCTCGGCAACATCCTCGACGTCGCCGCCCTCCTCTCCAAATCCACCTCCTCCGACATGCCCTCTATCTCCCACGACCTCGTCCCCCGCCTCCTCCCCCACTTCCTCGCTTGGTCCGCCCAATTCGGTAAGAGATTTATCTTTTGGAATGGGATCGAGCCGAGAATGTGTCTGACCGAAACGGATTTGATCAAAGAGCTTTTGTCGAAATACAGCGCGGTTTCGGGCAAGTCGTGGCTTCAACAACAGGGCTCTAAGCACTTCATTGGCCGAGGTCTCTTAATGGCCAACGGCCAAAACTGGTTGCACCAACGCCATATCGTCGCGCCGGCTTTTGTCGGCGACCGACTCAAGAGTTATGCGGGGTACATGGTGGAGTGCACAAGAGAGATGCTTCAATCAATAGAAAATGAGGTAAAATCGGGGCGATCCGAGTTTGAAATCGGCGAGTATATGACCAAACTCACTGCTGACATAATTTCCAGAACCGAGTTTGAAAGCAGTTATGAAAAGGGAAAACAAATCTTTCATTTGCTTACTGTTCTACAGCATCTCTGTGCCCAGGCCAGCCGCCATCTCTGCCTTCCCGGTAGCCGATTTTTTCCAAGTAAATATAACAGAGAGATAAAGGCATTGAAGGGGAAAGTGGAGGGATTGTTAATGGAGATAATACAAAGCAGAAGGGACTGTGTGGAGATTGGGAGGAGCAGTTCATATGGAAATGATTTATTGGGAATGTTGCTGAATGAGATGCAGAAGAAAAAAGATGGGAATGGTTTGAGTTTGAATTTGCAAATTATTATGGATGAATGCAAGACCTTCTTCTTTGCTGGCCATGAAACAACTGCTCTTTTGCTCACTTGGACTGTAATGTTATTAGCCACTAACCCTTCTTGGCAACAAAAGGTTCGAGCTGAAGTTATGACCGTTTGCAATGGCCAAACTCCCTCGCTCGATCATCTCTCCAAACTCTCCCTGTTGAGTATGGTGATAAATGAATCATTGCGACTATATCCACCGGCAAGTATTCTTCCAAGAATGGCATTTGAGGATATAAAATTGGGAGATCTTGAGATTCCGAAAGGATTGTCGATATGGATTCCAGTATTGGCCATTCACCACAGTGAAGAGTTATGGGGAAAAGATGCGAATGAGTTCAACCCAGAACGATTTAGCAATTCGAAAGCCTTTACGTCGGGGAGATTCATCCCTTTTGCTTCGGGCCCTCGAAACTGCGTCGGCCAATCGTTTGCTCTCATGGAAACCAAGATCATCTTGGCTATGCTCATCTCCAAGTTTAGCTTTACAATTTCGGACAATTATCGCCATGCACCTGTGGTTGTGCTTACTATAAAACCTAAATATGGCGTTCAAGTTTGCTTGAAGCCTTTGAATGAATAG | 1566 | 46.81 | MAVTFALVLTTLALAATSFFIFSLLYDTLSSYCLTPRRIKNKMAKQGVRGPKPRPLLGNILDVAALLSKSTSSDMPSISHDLVPRLLPHFLAWSAQFGKRFIFWNGIEPRMCLTETDLIKELLSKYSAVSGKSWLQQQGSKHFIGRGLLMANGQNWLHQRHIVAPAFVGDRLKSYAGYMVECTREMLQSIENEVKSGRSEFEIGEYMTKLTADIISRTEFESSYEKGKQIFHLLTVLQHLCAQASRHLCLPGSRFFPSKYNREIKALKGKVEGLLMEIIQSRRDCVEIGRSSSYGNDLLGMLLNEMQKKKDGNGLSLNLQIIMDECKTFFFAGHETTALLLTWTVMLLATNPSWQQKVRAEVMTVCNGQTPSLDHLSKLSLLSMVINESLRLYPPASILPRMAFEDIKLGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFNPERFSNSKAFTSGRFIPFASGPRNCVGQSFALMETKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPLNE | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45360102 | 45363116 | + | Maker00039267 | Lcy10g2131 | 645642 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g2131 | 521 | CDD | CYP72_clan | 87 | 513 | - | - | |
| Lcy10g2131 | 521 | Gene3D | Cytochrome P450 | 33 | 521 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | P450 superfamily signature | 384 | 395 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | P450 superfamily signature | 458 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | P450 superfamily signature | 467 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 210 | 228 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 321 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 467 | 490 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 94 | 113 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 341 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 457 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PRINTS | E-class P450 group I signature | 424 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 19 | 512 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy10g2131 | 521 | SUPERFAMILY | Cytochrome P450 | 50 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2131 | 521 | Pfam | Cytochrome P450 | 95 | 494 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g2131 | Lcy-Chr10:45360102 | Lcy9g2180 | Lcy-Chr9:46464919 | 4.41E-123 | dispersed | |
| Lcy12g0155 | Lcy-Chr12:1930288 | Lcy10g2131 | Lcy-Chr10:45360102 | 4.85E-238 | transposed | |
| Lcy1g1646 | Lcy-Chr1:16906465 | Lcy10g2131 | Lcy-Chr10:45360102 | 5.84E-113 | wgd | |
| Lcy10g2131 | Lcy-Chr10:45360102 | Lcy7g0423 | Lcy-Chr7:3645794 | 4.29E-24 | wgd | |
| Lcy10g2131 | Lcy-Chr10:45360102 | Lcy7g1100 | Lcy-Chr7:11903376 | 4.24E-103 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g2131 | K10717 | - | csv:101215037 | 947.577 |