Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2131 ATGGCCGTCACGTTTGCACTCGTTCTTACAACCCTGGCCTTGGCTGCGACGTCGTTTTTCATCTTCTCTTTGTTATACGACACCCTTTCCTCCTACTGCCTCACTCCTAGACGCATCAAAAACAAGATGGCCAAGCAAGGTGTGCGTGGCCCCAAACCCCGCCCTCTCCTCGGCAACATCCTCGACGTCGCCGCCCTCCTCTCCAAATCCACCTCCTCCGACATGCCCTCTATCTCCCACGACCTCGTCCCCCGCCTCCTCCCCCACTTCCTCGCTTGGTCCGCCCAATTCGGTAAGAGATTTATCTTTTGGAATGGGATCGAGCCGAGAATGTGTCTGACCGAAACGGATTTGATCAAAGAGCTTTTGTCGAAATACAGCGCGGTTTCGGGCAAGTCGTGGCTTCAACAACAGGGCTCTAAGCACTTCATTGGCCGAGGTCTCTTAATGGCCAACGGCCAAAACTGGTTGCACCAACGCCATATCGTCGCGCCGGCTTTTGTCGGCGACCGACTCAAGAGTTATGCGGGGTACATGGTGGAGTGCACAAGAGAGATGCTTCAATCAATAGAAAATGAGGTAAAATCGGGGCGATCCGAGTTTGAAATCGGCGAGTATATGACCAAACTCACTGCTGACATAATTTCCAGAACCGAGTTTGAAAGCAGTTATGAAAAGGGAAAACAAATCTTTCATTTGCTTACTGTTCTACAGCATCTCTGTGCCCAGGCCAGCCGCCATCTCTGCCTTCCCGGTAGCCGATTTTTTCCAAGTAAATATAACAGAGAGATAAAGGCATTGAAGGGGAAAGTGGAGGGATTGTTAATGGAGATAATACAAAGCAGAAGGGACTGTGTGGAGATTGGGAGGAGCAGTTCATATGGAAATGATTTATTGGGAATGTTGCTGAATGAGATGCAGAAGAAAAAAGATGGGAATGGTTTGAGTTTGAATTTGCAAATTATTATGGATGAATGCAAGACCTTCTTCTTTGCTGGCCATGAAACAACTGCTCTTTTGCTCACTTGGACTGTAATGTTATTAGCCACTAACCCTTCTTGGCAACAAAAGGTTCGAGCTGAAGTTATGACCGTTTGCAATGGCCAAACTCCCTCGCTCGATCATCTCTCCAAACTCTCCCTGTTGAGTATGGTGATAAATGAATCATTGCGACTATATCCACCGGCAAGTATTCTTCCAAGAATGGCATTTGAGGATATAAAATTGGGAGATCTTGAGATTCCGAAAGGATTGTCGATATGGATTCCAGTATTGGCCATTCACCACAGTGAAGAGTTATGGGGAAAAGATGCGAATGAGTTCAACCCAGAACGATTTAGCAATTCGAAAGCCTTTACGTCGGGGAGATTCATCCCTTTTGCTTCGGGCCCTCGAAACTGCGTCGGCCAATCGTTTGCTCTCATGGAAACCAAGATCATCTTGGCTATGCTCATCTCCAAGTTTAGCTTTACAATTTCGGACAATTATCGCCATGCACCTGTGGTTGTGCTTACTATAAAACCTAAATATGGCGTTCAAGTTTGCTTGAAGCCTTTGAATGAATAG 1566 46.81 MAVTFALVLTTLALAATSFFIFSLLYDTLSSYCLTPRRIKNKMAKQGVRGPKPRPLLGNILDVAALLSKSTSSDMPSISHDLVPRLLPHFLAWSAQFGKRFIFWNGIEPRMCLTETDLIKELLSKYSAVSGKSWLQQQGSKHFIGRGLLMANGQNWLHQRHIVAPAFVGDRLKSYAGYMVECTREMLQSIENEVKSGRSEFEIGEYMTKLTADIISRTEFESSYEKGKQIFHLLTVLQHLCAQASRHLCLPGSRFFPSKYNREIKALKGKVEGLLMEIIQSRRDCVEIGRSSSYGNDLLGMLLNEMQKKKDGNGLSLNLQIIMDECKTFFFAGHETTALLLTWTVMLLATNPSWQQKVRAEVMTVCNGQTPSLDHLSKLSLLSMVINESLRLYPPASILPRMAFEDIKLGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFNPERFSNSKAFTSGRFIPFASGPRNCVGQSFALMETKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPLNE 521
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 45360102 45363116 + Maker00039267 Lcy10g2131 645642
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2131 521 CDD CYP72_clan 87 513 - -
Lcy10g2131 521 Gene3D Cytochrome P450 33 521 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS P450 superfamily signature 467 478 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 94 113 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 PANTHER CYTOCHROME P450 FAMILY MEMBER 19 512 IPR050665 GO:0004497(PANTHER)
Lcy10g2131 521 SUPERFAMILY Cytochrome P450 50 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy10g2131 521 Pfam Cytochrome P450 95 494 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2131 Lcy-Chr10:45360102 Lcy9g2180 Lcy-Chr9:46464919 4.41E-123 dispersed
Lcy12g0155 Lcy-Chr12:1930288 Lcy10g2131 Lcy-Chr10:45360102 4.85E-238 transposed
Lcy1g1646 Lcy-Chr1:16906465 Lcy10g2131 Lcy-Chr10:45360102 5.84E-113 wgd
Lcy10g2131 Lcy-Chr10:45360102 Lcy7g0423 Lcy-Chr7:3645794 4.29E-24 wgd
Lcy10g2131 Lcy-Chr10:45360102 Lcy7g1100 Lcy-Chr7:11903376 4.24E-103 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2131 K10717 - csv:101215037 947.577