Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2140 ATGCACATTTGCAATCATGATTTCCAATTCGTAAAATATTTGAAGACCGCCATGGGAGAGAAAGAAAACCTGGCGCCAAGTGCAGTCGTCTCTGATGCAGTGCAGAAACCGCCGCACTTTGTGCTCGTTCATGGCGTAAGTGGAGGAGGATGGTGCTGGTACAAAATCAGGTGTTTAATGGAGAATTCTGGCTTCAAAGTCACTTGTATTGATCTCAAAGGCGCCGGAATCGACCGTTCCGATCCGAATTCCGTCGTCAAATTCGACGATTACAACAAGCCTTTGCTCGATTTCATCTCAAGTCTACCGGAAAACGAACAGATCATTCTGGTTGGACATAGCGCTGGAGGATTAAGTGTTACTCAAGCAACGCTGAAATTCGCGAAGAAAATCCGTTTGGCGGTGTATGTAGCGGCAACGATGCTGAGATTTGGCTTCCAGACTGATCAAGATACCAAAGATGGAGTGCCGGATTTAACTGAGTTTGGAGATGTATATGACATGGAATTTGGACTAGGACCCCAACAACCTCCCACCACTGCTGTCATCAAGAGGGAATTCCAGAGGAAAATCGTCTATCACATGAGTCCCCACGAGGATTCGACGCTGGCCGCCATGCTTCTGAGGCCAGGGCCAATCCTCGCGTTACAGACCACTCGGTTTACAGAGGAGCACGACGATGCCGAAAAGGTGAAACGAGCGTATATAAAAACGATGTATGATCGAGTAATGAAACCAGAGCAACAAGATGCTATGATAAAGAGATGGCCGCCTGAGATAGTATATGAAATGGATACTGATCACAGCCCCTTTTTCTCCAACCCATCTCTGCTCTTTGGCTTGCTTGTAAAAGCTGCAGCCTCAACGGGGTGTAACTAA 879 47.1 MHICNHDFQFVKYLKTAMGEKENLAPSAVVSDAVQKPPHFVLVHGVSGGGWCWYKIRCLMENSGFKVTCIDLKGAGIDRSDPNSVVKFDDYNKPLLDFISSLPENEQIILVGHSAGGLSVTQATLKFAKKIRLAVYVAATMLRFGFQTDQDTKDGVPDLTEFGDVYDMEFGLGPQQPPTTAVIKREFQRKIVYHMSPHEDSTLAAMLLRPGPILALQTTRFTEEHDDAEKVKRAYIKTMYDRVMKPEQQDAMIKRWPPEIVYEMDTDHSPFFSNPSLLFGLLVKAAASTGCN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45421235 45426913 - Maker00039825 Lcy10g2140 645651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2140 292 Pfam Alpha/beta hydrolase family 40 275 IPR000073 -
Lcy10g2140 292 SUPERFAMILY alpha/beta-Hydrolases 36 283 IPR029058 -
Lcy10g2140 292 Gene3D alpha/beta hydrolase 33 288 IPR029058 -
Lcy10g2140 292 PANTHER METHYLESTERASE FAMILY MEMBER 38 286 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Lcy10g2140 292 FunFam putative methylesterase 11, chloroplastic 34 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2140 Lcy-Chr10:45421235 Lcy9g0096 Lcy-Chr9:1969146 1.47E-46 dispersed
Lcy10g2140 Lcy-Chr10:45421235 Lcy8g1064 Lcy-Chr8:36524033 8.67E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1636 . . . . . . . . . . Cma01g00836 . Car01g00775 . . Cpe06g01012 . . . . . . . . Cla08g00040 Cam08g0039 Cec08g0213 Cco08g0092 Clacu08g0055 Cmu08g0053 Cre08g0043 . . . . . . . Cme09g00023 . . . . . . . . Sed06g0856 Cmo01g00876 Cmo09g01322 . . . Car09g01152 . Cpe02g01023 Bhi06g00240 Tan10g2040 Cmetu09g0728 . Hepe02g3268 . Lcy10g2140 . . . . . . . Lsi08g00030 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008121 3 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35