Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2150 ATGCTAACATTTTTGAAGATGAAAAGAGTATTGGGTGAGTTCGTCTTGTTCGTCTTGTTCGTTGTGGCTCCAGCGTTTGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGCCTGATTGTGTTCAAGGCCGACATTGAAGATCCTAAAGGGAAGCTCGCCTCGTGGAGTGAAGATGATGATAGCCCCTGTAATTGGGTTGGTATAAAATGCAACCCCAGATCCAATAGAGTCGTTGAGCTCGATCTTGATGGGTTCTCTCTCAATGGCAGGCTCGGCCGTGGCCTTCTTCAGCTGCAGTTTCTTCGTAAACTTTCGCTTTCGAACAACAATCTTACTGGAAATTTGAGTCCCAATAATGCTCGCTTTGAGAATCTTCGAGTGGTCGATTTAAGCGGCAACAGTTTTTCTGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTACTATCTTTGGCTAAGAACAAACTTTCTGGGAGAATCCCTGAAAGTTTGGGCTCTTGTACTAGTCTTGCTGCTCTTAATTTATCTTCTAATCAGTTTTCAGGTTCACTGCCTTCTGGGATTTGGTCCTTGACTGGGCTTCGATCTCTGGATTTGTCTGATAATGTTTTAGAAGGTGAAATTCCACAGGAGGTGAAGGGTATGAATAATTTGAGAGCTGTTAATTTGGGGAAGAATCGGTTTTCTGGGCAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGATGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACCCTTAATTTAAGAAGGAACTTATTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCAGGTTCCAAGTTCATTTGGGAATCTTCAGAATCTGAAGGTTTTGAATCTTTCTGAAAATGATTTAACTGGTAGCTTGGCAGAGTCCATAGTTCCTTCTCAGAACCTTTCAACCATGGATCTTGGTCACAGTTCTCTCACCGGTGTTCTTCCGGCGTGGATTCTCAAGTTGGGTTCTCAAAATGTATTGCCTTCTGATGTCAAAAGAAGCTCTCTTTCTACAACAGCGGGAAAAGCTCTTGTTAATCTTCAAGTGTTAGATTTGTCTCACAATGCATTTTCAGGTGAAATTTCACCTGAGATTGGGATATTAAGCAACTTGCAGGTGTTGAACCTGTGCAAGAACTCATTTGTTGGGGCTATTCCAGCGAGTATTGGAGGCCTGAAGGCCTTGGTTCTTCTTGACTTGAGTGAGAACCAGTTGAATGGGAGCATTCCTGAAGCAATCGGTGGAGATGTATCGTTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAATTCAATAGGGAACTGTTCTTCACTTGTAACTTTGGACATATCAGAAAACAGATTAACTGGTTCCATACCAGCAGCATTGTCTCAACTGACTAGTCTTCAAATTGTGGACTTTTCAACAAACAATCTCAGTGGTGCACTGCCTAAACAGTTGGCCAATCTTCCCAACCTTCTTGTGTTTAACATTTCTCACAACAATCTGCAAGGTGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCCCCTTCCTCTGTTGCTGGAAATCCATCTCTTTGTGGTTCTATTGTCAAGAAGTCTTGTCCTGGTGTCCTTCCAAAACCTATTGTTCTCAATCCCAACTCATCCTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAAAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCGATCACCGTCCTTAACTTCCATGTTCGGTCATCTGCAAATCGTCCTGAAGCAGCCATCACGTTTTCTGGAGGGGATGATTTCAGCCACTCCCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGAGCCCGACTTCAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGCGAGCTTGGCCGTGGTGGATTTGGAGCAGTTTACCAGACTGTTCTTCGTGATGGGCATCCAGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTAGTCAAATCTCAAGAAGACTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTTGCTCTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGAGGAAACATCCTCTCATGGAATGAAAGGTTCAATATAATCCTCGGAACGGCGAAAAGCTTGGCACATTTGCACCAAATGAATATCATCCACTACAATATAAAGTCAAGCAATGTCCTGATTGATAGTTCGGGTGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAAAGTGCACTCGGCTATATGGCGCCTGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTAGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGACGTGGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTGGAGGAATGCATTGATGGGAGGCTTCAGGGGAATTTTCCCTCCGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACCTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2922 44.46 MLTFLKMKRVLGEFVLFVLFVVAPAFVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWSEDDDSPCNWVGIKCNPRSNRVVELDLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNSFSGMIPDDFFRQCGSLRVLSLAKNKLSGRIPESLGSCTSLAALNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPQEVKGMNNLRAVNLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNLFEGKVPEWIGEMEGLEILDLSGNRFSGQVPSSFGNLQNLKVLNLSENDLTGSLAESIVPSQNLSTMDLGHSSLTGVLPAWILKLGSQNVLPSDVKRSSLSTTAGKALVNLQVLDLSHNAFSGEISPEIGILSNLQVLNLCKNSFVGAIPASIGGLKALVLLDLSENQLNGSIPEAIGGDVSLKELRLEKNLLEGEVPNSIGNCSSLVTLDISENRLTGSIPAALSQLTSLQIVDFSTNNLSGALPKQLANLPNLLVFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKKIILSISALIAIGAAAVILVGVVAITVLNFHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQGNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45502300 45506513 + Maker00039425 Lcy10g2150 645661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2150 973 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Lcy10g2150 973 Gene3D Phosphorylase Kinase; domain 1 683 766 - -
Lcy10g2150 973 ProSiteProfiles Protein kinase domain profile. 690 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2150 973 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Lcy10g2150 973 SMART LRR_typ_2 150 174 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 318 341 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 125 149 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 198 221 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 437 461 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 222 246 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 509 532 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 294 317 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 533 557 IPR003591 -
Lcy10g2150 973 SMART LRR_typ_2 389 413 IPR003591 -
Lcy10g2150 973 Gene3D Ribonuclease Inhibitor 313 583 IPR032675 -
Lcy10g2150 973 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524(InterPro)
Lcy10g2150 973 Pfam Leucine rich repeat 414 474 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 Pfam Leucine rich repeat 487 546 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 Pfam Leucine rich repeat 296 354 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 684 766 - -
Lcy10g2150 973 SUPERFAMILY Protein kinase-like (PK-like) 693 963 IPR011009 -
Lcy10g2150 973 CDD STKc_IRAK 696 962 - -
Lcy10g2150 973 Pfam Protein tyrosine and serine/threonine kinase 692 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2150 973 SUPERFAMILY RNI-like 109 552 - -
Lcy10g2150 973 Gene3D Ribonuclease Inhibitor 35 312 IPR032675 -
Lcy10g2150 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 583 - -
Lcy10g2150 973 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 Pfam Leucine Rich Repeat 104 120 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 Pfam Leucine Rich Repeat 391 411 IPR001611 GO:0005515(InterPro)
Lcy10g2150 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 35 313 - -
Lcy10g2150 973 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 767 968 - -
Lcy10g2150 973 PANTHER OS05G0588300 PROTEIN 386 479 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2150 Lcy-Chr10:45502300 Lcy5g0033 Lcy-Chr5:497499 1.07E-213 dispersed
Lcy10g2150 Lcy-Chr10:45502300 Lcy7g1082 Lcy-Chr7:11576919 2.89E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65427 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2150 - - - 0.0