Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2154 ATGGCGATCTCTTCTCTCTCAATTTTGCTCCTGATTTTCCTCCCTGCAATCTCGGCTGACTACGGCGGAATGCAGTCGGGCCACGCCACGTTCTATGGCGGCGGCGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACGGCCAAGGATACGGGACGAACACGGCGGCGTTGAGTACGGCTCTGTTCAACAATGGGCTGAGCTGTGGGTCTTGTTATGAGATTAGTTGCAGCAGTGATCCCAAGTGGTGTCTTCCTGGGAAAATCATCGTCACTGCCACTAATTTTTGCCCGCCCAACTTTGCTCTCTCCAACGACAATGGCGGCTGGTGCAACCCGCCTCTGCAGCACTTTGACTTGGCTGAGCCTGCCTTTCTCCAAATCGCTCAGTACCGTGCTGGCATCGTCCCCGTCTCCTTCCGAAGAGTGCCATGCGTGAAGAAGGGAGGAATAAGGTTCACGATCAACGGCCATTCATACTTCAACTTGGTGCTCATCACCAACGTCGGCGGCGCCGGCGACGTCCACTCGGTCTCGATCAAAGGATCCAAAACCGGATGGCAAGCAATGTCCAGAAATTGGGGACAGAACTGGCAGAGCAACAATTACCTGAACGGACAGAGCCTCTCTTTCCAAGTCACCACCAGCGACGGCCGCACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTCGGCCAGACCTTTGAGGGAGGCCAATTCTGA 741 56.01 MAISSLSILLLIFLPAISADYGGMQSGHATFYGGGDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLSCGSCYEISCSSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGGQF 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45546815 45548080 + Maker00039137 Lcy10g2154 645665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2154 246 SMART dpbb_1 59 144 IPR007112 -
Lcy10g2154 246 PRINTS Expansin signature 153 165 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 81 92 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 200 221 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 165 186 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 229 245 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 54 68 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 112 129 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 129 142 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 PRINTS Expansin signature 93 103 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Lcy10g2154 246 FunFam Expansin 15 150 - -
Lcy10g2154 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Lcy10g2154 246 PANTHER EXPANSIN-A15 7 246 IPR002963 GO:0009664(InterPro)
Lcy10g2154 246 Pfam Lytic transglycolase 59 144 IPR009009 -
Lcy10g2154 246 CDD DPBB_EXPA_N 25 149 - -
Lcy10g2154 246 FunFam Expansin 154 246 - -
Lcy10g2154 246 Gene3D - 153 246 IPR036749 -
Lcy10g2154 246 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Lcy10g2154 246 Gene3D - 15 149 IPR036908 -
Lcy10g2154 246 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576(InterPro)
Lcy10g2154 246 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Lcy10g2154 246 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
Lcy10g2154 246 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576(InterPro)
Lcy10g2154 246 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
Lcy10g2154 246 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576(InterPro)
Lcy10g2154 246 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Lcy10g2154 246 SUPERFAMILY Barwin-like endoglucanases 11 172 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2154 Lcy-Chr10:45546815 Lcy7g0294 Lcy-Chr7:2530779 8.05E-145 dispersed
Lcy10g2154 Lcy-Chr10:45546815 Lcy7g1071 Lcy-Chr7:11465885 2.72E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2154 - - - 0.0