Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2164 ATGTCAAGAGAAAGGGAATTATCGGAGGTGGACGAGATAGGGAAGAAGATAAAGAGGGAAGTTGAAGGGTTGTATCCTTTGATGGGAAGAAGGCACATTTTGAGTCCAGCTGGGACATTGAATACAATAACTCCATGTGCAGCTTGTAAGCTTCTAAGAAGAAGGTGTGCCCAAGAATGTCCATTTTCTCCTTACTTCTCTCCACATGAACCCCACAAATTTGCTTCTGTTCACAAGGTTTTTGGTGCCAGCAACGTTGCCAAGATGCTCATGGAGGTACCGGAAAGCCAAAGAGCCGACGCGGCAAACAGCCTAGTTTATGAAGCCAATCTGAGGCTGAGAGATCCAGTCTACGGTTGCATGGGCGCCATTTCAGCTCTTCAACACCAAGTTCAAACTTTACAAGCTGAGCTCAATGCTATTAGAACTGAGATTTTGAAGTACAAATATAGAGAAGCCATAATTCCTTCTCCTTCTTCTTCCTCCTCTTCTCACATCGCTTTGATTTCGGCAGCCGGTGTCGTTTCCACCACCGCAACGCCGCCCGCAGCCCCACCGACTCCGCCACATTCTCAGCCGCCTCCGCTCTCTCTTCCGCCACCTCTTCCTCCGTCTTCGTCTTCCATCTATTCCACGCCCATCAGCAGTACTACTGCCCCTGAATTTAACCCCATCTCAACCGAACATATTTCCTACTTCGGATGA 705 48.37 MSRERELSEVDEIGKKIKREVEGLYPLMGRRHILSPAGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQVQTLQAELNAIRTEILKYKYREAIIPSPSSSSSSHIALISAAGVVSTTATPPAAPPTPPHSQPPPLSLPPPLPPSSSSIYSTPISSTTAPEFNPISTEHISYFG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45606970 45609124 + Maker00039176 Lcy10g2164 645675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2164 234 MobiDBLite consensus disorder prediction 208 222 - -
Lcy10g2164 234 MobiDBLite consensus disorder prediction 177 222 - -
Lcy10g2164 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 43 165 - -
Lcy10g2164 234 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Lcy10g2164 234 Coils Coil 124 144 - -
Lcy10g2164 234 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Lcy10g2164 234 MobiDBLite consensus disorder prediction 181 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2164 Lcy-Chr10:45606970 Lcy8g1638 Lcy-Chr8:42979317 7.28E-51 dispersed
Lcy10g2164 Lcy-Chr10:45606970 Lcy7g1059 Lcy-Chr7:11260556 2.05E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19052 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2164 - - - 0.0