Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2165 ATGGCTCGAGTTTTGATTTTGACTTTGGCTTCGTTTGTGCTTTTTTTGGGCAATTCCTCAGCTCAACTTTCTACTAGTTTCTACTCTTCTTCTTGTCCAAGTTTGTCGTCCATTGTCCGATCCTCTGTTAGTACTGCTATTTTGACCGACATTCGCATGGGGGCTTCCCTTCTTCGCTTGTTTTCTCAAGACTGTTTCGTCAATGGATGTGACGCGTCGATTTTGTTAGACGACACACCGGACTTCATTGGAGAGAAAACTGCAGGTTCCAACGTAAACTCTGCTAGAGGTTTTGAGGTCATTGATAGTATCAAAGCTGCTGTCGAAGATGTTTGCCCTGGCGTTGTTTCTTGTGCTGATATTCTCGCCATTGCCGCTCGTGACTCTGTTTCTCTTCTAGGAGGTCCGAGCTGGAACATGCCATTGGGAAGAAGAGATGCTAGAACCGCAAGCCTATCTCAAGCCAACAACAACATCCCTAACCCGACTTCAACCCTAAACCAACTCATCTCTAGATTCGCCGCTCTCGGATTGACCCAGGGCAACATGGTTGCTCTCTTAGGAGCGCACACGATTGGAGAAGCAAGGTGCGGGACATTCAGGGACAGAGCATACAACGCCACAAACATTGACCCTACATATGCAGCAACATTGAGAGCCCGTTGCCCCGACAGCCCCGGCTCTGGCGACAACAATTTGACTCCTCTGGATGTGGGAAGTCCATTTTCTTTTGACAACAGCTACTTTAGGAACGTTGTTATGCGAAGGGGCCTCCTCCAATCGGATCAAGTTCTCTTCAATGGCGTATCTACTAACCACATTGTCCTAAGTTACGCCAATAACCCGGGCAAATTCTTTTTTGATTTTGCTGCCGCCATGGTCCGGATGGGCAATATCAGCCCTCTTACTGGCTCCAATGGCGAAATTAGGACCAACTGCAGGAGGGTTAATGAAAATTAA 960 47.6 MARVLILTLASFVLFLGNSSAQLSTSFYSSSCPSLSSIVRSSVSTAILTDIRMGASLLRLFSQDCFVNGCDASILLDDTPDFIGEKTAGSNVNSARGFEVIDSIKAAVEDVCPGVVSCADILAIAARDSVSLLGGPSWNMPLGRRDARTASLSQANNNIPNPTSTLNQLISRFAALGLTQGNMVALLGAHTIGEARCGTFRDRAYNATNIDPTYAATLRARCPDSPGSGDNNLTPLDVGSPFSFDNSYFRNVVMRRGLLQSDQVLFNGVSTNHIVLSYANNPGKFFFDFAAAMVRMGNISPLTGSNGEIRTNCRRVNEN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45611006 45612573 - Maker00039838 Lcy10g2165 645676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2165 319 Gene3D - 27 314 - -
Lcy10g2165 319 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 SUPERFAMILY Heme-dependent peroxidases 22 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PANTHER PEROXIDASE 72-RELATED 11 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 Gene3D Peroxidase, domain 2 160 296 - -
Lcy10g2165 319 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2165 319 FunFam Peroxidase 26 169 - -
Lcy10g2165 319 FunFam Peroxidase 160 296 - -
Lcy10g2165 319 CDD secretory_peroxidase 22 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy10g2165 319 Pfam Peroxidase 39 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2165 Lcy-Chr10:45611006 Lcy8g1698 Lcy-Chr8:43551438 2.57E-122 dispersed
Lcy10g2165 Lcy-Chr10:45611006 Lcy10g2166 Lcy-Chr10:45617250 2.58E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2165 K00430 - gmx:100803637 402.905