Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy10g2166 | ATGGCTCGAGCTTTGATTTTGACTTTGGCTTTGTCTGTGCTCTTTTTGGGCAATGCCTCAGCTCAGCTTTCTACTAGTTTTTACTCTTCTTCTTGTCCAAATTTGTTGTCCACGGTCAAATCCTCTGTTCGGTCTGCTGTCTCGAGTGAGGCTCGCATGGGAGCTTCCCTTCTTCGCTTGTTTTTTCACGACTGTTTTGTCAATGGATGTGATGGGTCGATTTTGTTGGACGACACGTCGAGCTTCACTGGAGAGAAAAATGCAAACCCCAACCGAAACTCCGCTAGAGGCTTCGATGTTATTGACAATATCAAAACTGCGGTTGAAAAGGCTTGTCCTGGCGTTGTTTCTTGTGCTGATATTCTTGCCATTGCTGCTCGTGACTCTGTTGTTCTCCTAGGCGGGCCGAGCTGGAATGTGAAGTTGGGAAGAAGAGATGCCACAACCGCTAGTCAATCCCAAGCCAACAGTGACATCCCCGCTCCAACTTCAACCCTAAGCCAACTCACCTCTAGATTCAGTGCCCTTGGACTCTCCAACACCGACTTGGTCGCTCTCTCAGGCGGACATACGATCGGACAAGCGAGGTGCACAACATTCAGAGGTAGAATATACAGCAACGCCACAAACATAGACAGCTCATTTGCAACAACAAGGCAAGGGAATTGCCCCAGCACCTCCGGCTCCGGCGACAACAATTTGGCTCCTCTTGATTTGCAGACTCCAAATGGTTTCGACAACAAATACTTCAACAACCTTCTTCAAAACAAGGGCTTGCTCCAGTCCGATCAAGTTCTCTTCAATGGCGGATCTACAGACTCCACTGTCCAAAATTACGCTAACGCCCCTGCCCGTTTCTTCTCTGATTTTGCCGCCGCCATGGTCAAGATGGGCGATATCAGTCCTCTTACTGGCTCCAATGGCGAAATTAGGAAGAACTGCAGAATGAGCTTTGCTGAAATCACCATGACAACAGAAGCTTCATCCTCCTCTTCTCTTTCTTCTTCTGCTGAAATCACCCCACCGGTTATCTTCCCATCTACACCCGTCACCACTCCGATTGTCTCTCCGATTGCCCAGACCCCCAAACAGCCACCATCTCAACCGCGTTCTTTTCTCCCCCAAAATCGCCCTAATGTTGCTCCAACCCAACCCACGTACAATCCATATCAACCACAGCCGTTTTATCCAACTTCCGGCGTCTATCAACCATTTTATCCTCCTTCTTTTCCTCGCCCTCAAGCTCCTCTAAAGAAAGCTCCCCCATGGAGATCCGAGAAGTTTTTGGCCTCTATAAAAACTCCCCCATGTGGTGTTTCTTCTTCATCAACACCACTTGCCACTTGGAAAGTTGTCACAGAGCTTGTGGGTTCTTTTCTTGTAGCAATGGCTCGAGTTTTGATTTTGATTTTGGCTTCGTTTGTGCTCTTTTTGGGCAATTATTCCTCAGCTCAACTTTCTGTTAATTTCTACGCTTCTTCTTGTCCAGCTGTGTTGCTCATTGTCCGATCCTCTGTTCGAACCGCTGTGTTGAGTGAGGCTCGCATGGGGGCTTCCCTTCTTCGCTTGTTCTCTCAAGACTGTTTCGTCAATGGATGTGACGCGTCGATTTTGTTAGACGACACACCGGACTTCACTGGAGAGAAAACTGCAGATTCCAACGCTAACTCTGTTAGAGGCTTTGAGGTCATCGACAATATCAAAGCTGCTGTTGAAGCGGTTTGCCCTGGGGTTGTTTCTTGTGCTGATATTCTAGCCATTGCCGCCCATGACGCTGCTGTTTTTCTAAGAGGGCCGAACTGGGAAGTGAAATTGGGAAGAAGAGATGCCACAACCGCAAGCCTATCTCAAGCCAACAGCGACATCCCTGGCCCGAATTCAACCCTAGGCCAACTCGTCTCGAGATTCGCCGCTCTCGGATTGTCCGTGCGCGACATGGTTGCTCTCTTAGGCGCACACACTATCGGATATGCGAGGTGCGTGACATTCAGAGACAGAGCATACAACGCCACAAACATTGACCCTGAATACGCAGCAACATTGAGAGCCCTTTGCCCCAACAGCCCCGACTCTGGCGACAACAATTTGACTCCTCTGGATCGGCAAACTCAAAATGTTTTTGACAACGGCTACTTCAGGAACCTTGTTCAGCAAATGGGCCTCCTCCAATCCGATCAAGTTCTCTTCGATGGCGGATCTACTGACTCCATTGTCATGAATTACGTCGCAAACTCTGTCCTTTTCCGTAATGATTTTGCTGCCGCCATGGTCCGGATGGGCAATATCAGCCCTCTTACTGGCTCCGATGGCGAAATTAGGAACAACTGCAGGAGGGTTAATTAA | 2343 | 48.87 | MARALILTLALSVLFLGNASAQLSTSFYSSSCPNLLSTVKSSVRSAVSSEARMGASLLRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNSARGFDVIDNIKTAVEKACPGVVSCADILAIAARDSVVLLGGPSWNVKLGRRDATTASQSQANSDIPAPTSTLSQLTSRFSALGLSNTDLVALSGGHTIGQARCTTFRGRIYSNATNIDSSFATTRQGNCPSTSGSGDNNLAPLDLQTPNGFDNKYFNNLLQNKGLLQSDQVLFNGGSTDSTVQNYANAPARFFSDFAAAMVKMGDISPLTGSNGEIRKNCRMSFAEITMTTEASSSSSLSSSAEITPPVIFPSTPVTTPIVSPIAQTPKQPPSQPRSFLPQNRPNVAPTQPTYNPYQPQPFYPTSGVYQPFYPPSFPRPQAPLKKAPPWRSEKFLASIKTPPCGVSSSSTPLATWKVVTELVGSFLVAMARVLILILASFVLFLGNYSSAQLSVNFYASSCPAVLLIVRSSVRTAVLSEARMGASLLRLFSQDCFVNGCDASILLDDTPDFTGEKTADSNANSVRGFEVIDNIKAAVEAVCPGVVSCADILAIAAHDAAVFLRGPNWEVKLGRRDATTASLSQANSDIPGPNSTLGQLVSRFAALGLSVRDMVALLGAHTIGYARCVTFRDRAYNATNIDPEYAATLRALCPNSPDSGDNNLTPLDRQTQNVFDNGYFRNLVQQMGLLQSDQVLFDGGSTDSIVMNYVANSVLFRNDFAAAMVRMGNISPLTGSDGEIRNNCRRVN | 780 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45617250 | 45627034 | - | Maker00039604 | Lcy10g2166 | 645677 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy10g2166 | 780 | FunFam | Peroxidase | 623 | 759 | - | - | |
| Lcy10g2166 | 780 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 182 | 192 | IPR019793 | - | |
| Lcy10g2166 | 780 | MobiDBLite | consensus disorder prediction | 355 | 388 | - | - | |
| Lcy10g2166 | 780 | FunFam | Peroxidase | 26 | 171 | - | - | |
| Lcy10g2166 | 780 | FunFam | Peroxidase | 160 | 297 | - | - | |
| Lcy10g2166 | 780 | Gene3D | - | 27 | 315 | - | - | |
| Lcy10g2166 | 780 | PANTHER | PEROXIDASE 72-RELATED | 13 | 316 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | CDD | secretory_peroxidase | 22 | 315 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Lcy10g2166 | 780 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 645 | 655 | IPR019793 | - | |
| Lcy10g2166 | 780 | PRINTS | Haem peroxidase superfamily signature | 116 | 133 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Haem peroxidase superfamily signature | 238 | 253 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Haem peroxidase superfamily signature | 134 | 146 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Haem peroxidase superfamily signature | 182 | 197 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Haem peroxidase superfamily signature | 54 | 68 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | ProSitePatterns | Peroxidases active site signature. | 54 | 65 | IPR019794 | GO:0004601(InterPro) | |
| Lcy10g2166 | 780 | CDD | secretory_peroxidase | 485 | 779 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Lcy10g2166 | 780 | ProSiteProfiles | Plant heme peroxidase family profile. | 22 | 318 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | FunFam | Peroxidase | 489 | 635 | - | - | |
| Lcy10g2166 | 780 | Pfam | Peroxidase | 39 | 281 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | Pfam | Peroxidase | 502 | 744 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | Gene3D | - | 489 | 777 | - | - | |
| Lcy10g2166 | 780 | SUPERFAMILY | Heme-dependent peroxidases | 485 | 780 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | SUPERFAMILY | Heme-dependent peroxidases | 22 | 316 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | ProSiteProfiles | Plant heme peroxidase family profile. | 485 | 780 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 32 | 51 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 115 | 125 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 292 | 305 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 236 | 251 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 96 | 109 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 181 | 193 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 56 | 76 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 134 | 149 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | PRINTS | Plant peroxidase signature | 252 | 269 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Lcy10g2166 | 780 | Gene3D | Peroxidase, domain 2 | 623 | 759 | - | - | |
| Lcy10g2166 | 780 | Gene3D | Peroxidase, domain 2 | 160 | 297 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g2166 | Lcy-Chr10:45617250 | Lcy8g2145 | Lcy-Chr8:47595930 | 3.01E-126 | dispersed | |
| Lcy10g2165 | Lcy-Chr10:45611006 | Lcy10g2166 | Lcy-Chr10:45617250 | 2.58E-158 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy10g2166 | K00430 | - | csv:101218447 | 545.043 |